CN181808

Overview
NameCN181808
Unique NameCN181808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI4_BRANA (Basic endochitinase CHB4 OS=Brassica napus PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.576e-21
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:  397 YCFISEVSPPS-DYCDPN---YPCR-GK-YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPP 633
            +C+I E++  S DYCD N   YPC  GK Y+GRGPIQLSWNYNY  C             P+L++++P ++F++ +WFWM +  P
Sbjct:  136 FCYIEEINGASRDYCDENNRQYPCAPGKGYFGRGPIQLSWNYNYGAC--GQSLNLNLLGQPELVSSNPTVAFRTGLWFWMNSVRP 218          

HSP 2 Score: 42.743 bits (99), Expect = 5.576e-21
Identity = 22/60 (36.67%), Postives = 33/60 (55.00%), Query Frame = 3
Query:  150 LGKIISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            +G I+++  F+ ++       C  + FYT D+FI AA  FP F NS    + +REIA  F
Sbjct:   72 VGSIVTQAFFNGIINQAGGG-CAGKNFYTRDSFINAANTFPNFANS----VTRREIATMF 126          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.242e-21
Identity = 46/113 (40.71%), Postives = 53/113 (46.90%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPP--SDYCDPN----YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMT 621
            K +   FFA   HETT               C I E        YCD +    YPC    KYYGRGP+QLSWNYNY               NP+ +ATD   SFK+A+WFWMT
Sbjct:  136 KREIAAFFAHISHETTN-------------LCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          

HSP 2 Score: 45.8246 bits (107), Expect = 7.242e-21
Identity = 25/57 (43.86%), Postives = 33/57 (57.89%), Query Frame = 3
Query:  159 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            I+S+  FD ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFF
Sbjct:   90 IVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFF 143          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.509e-20
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 1
Query:  307 KEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVSPPS-DYCDPN---YPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 618
            K +   FFA   HET                C+I+E++  + DYCD +   +PC+   KYYGRGP+Q+SWN+NY               +PD +A DP +SFK+A+WFWM
Sbjct:  135 KREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          

HSP 2 Score: 42.3578 bits (98), Expect = 3.509e-20
Identity = 20/53 (37.74%), Postives = 30/53 (56.60%), Query Frame = 3
Query:  171 EMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            E F + ++ +    C  + FYT  +F+ AA+++ GF N       KREIAAFF
Sbjct:   90 EAFFNGIKNQAPNGCAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFF 142          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.059e-18
Identity = 34/81 (41.98%), Postives = 46/81 (56.79%), Query Frame = 1
Query:  397 YCFISEVSPPS-DYCDPN----YPCRGK--YYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWM 618
            +C+I E+   S DYCD      YPC     Y+GRGPIQLSWN+NY                P+ ++ D V+SFK+A+W+WM
Sbjct:  136 FCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          

HSP 2 Score: 43.8986 bits (102), Expect = 3.059e-18
Identity = 21/57 (36.84%), Postives = 34/57 (59.65%), Query Frame = 3
Query:  159 IISREMFDDLLEYRNDERCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKREIAAFF 329
            I++ +  + +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA F
Sbjct:   71 ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAF 126          
BLAST of CN181808 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.972e-16
Identity = 48/136 (35.29%), Postives = 71/136 (52.21%), Query Frame = 1
Query:  268 FQALVTLEMKPCVKEKSLPFFAQTGHETTGGWPDAPGGEYAWGYCFISEVS-PPSDYC-DPNYPCRG--KYYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWFWMTAQPPKPSCHEVIID 663
            F A  T+      K +   F A     T+G   D     +AWG C I+  +   +D+C   ++PC    KY  RGPIQL+ N+NY               NPDL+  DP++SFK+A+WFWM+    KPSCH+++++
Sbjct:  167 FPAFGTIGDVATRKREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY--GLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMSQHDNKPSCHDIVLN 299          
The following BLAST results are available for this feature:
BLAST of CN181808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI4_BRANA5.576e-2144.71Basic endochitinase CHB4 OS=Brassica napus PE=1 SV... [more]
CHIP_BETVU7.242e-2140.71Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_ORYSJ3.509e-2038.18Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU3.059e-1841.98Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
AGI_URTDI2.972e-1635.29Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001I03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001I03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181808 ID=CN181808; Name=CN181808; organism=Citrus sinensis; type=EST; length=696bp
GAGGCTGTTGCTTTCAAATGAGGCTTATTGGGTCCTTACTAATTTTCTCT
CTAGTTTTATCTTTTGTACTAGGAGGCTCAGCACAGAACTGTGGAAGCGG
CGTTGTGTACGGTGGACGTGATACCGGCCATGGGACGCATGGCGGTGAAC
TGGGCAAGATCATCTCAAGGGAGATGTTTGATGACTTGCTTGAGTATAGA
AATGATGAACGATGCCCTGCCAGAGGCTTCTACACTTATGATGCTTTTAT
AGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACTCTGGAAATGAAACCA
TGCGTAAAAGAGAAATCGCTGCCTTTTTTTGCCCAAACTGGCCATGAAAC
TACTGGGGGATGGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATT
GCTTTATAAGCGAAGTTAGCCCTCCGTCCGACTACTGTGATCCTAACTAT
CCATGTCGAGGGAAGTACTATGGCCGAGGTCCAATTCAACTCTCTTGGAA
TTACAATTACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGT
TGAACAATCCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCA
GCAATCTGGTTCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGA
AGTCATTATCGACGAATGGAAACCATCAGCAAATGACGTAAACGCC
back to top