CN188730

Overview
NameCN188730
Unique NameCN188730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.368e-14
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363
            +G K+HLKRL AP  W + +    +A +PS GPH  +  +PLI I+R+ L YA T RE   IL +  +LVD +VR D  +P G MD  S
Sbjct:    4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVS 92          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD KVR D  +P G MD  S
Sbjct:    4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVS 92          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            +G +KHLKRL APK+W + +    +  +PS+GPH     LPL+L+LR+ L YA   RE   ++    VLVD   R D  YP G MD
Sbjct:    4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMD 89          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14
Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   91 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            MAR G ++HLK L APK W + +  G F  KPS GPH     +PL++++R+ L YA T RE   ++ + H  +D +VR +  YP GFMD
Sbjct:    1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMD 89          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.276e-14
Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   91 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            MAR G KKHLK L APK W + +    +A KPS GPH    C PL++I+R+ L YA T RE   ++ + H  VD +VR +  YP G MD
Sbjct:    1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMD 89          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.999e-14
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD +VR D  +P G MD  S
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVS 92          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.999e-14
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1
Query:   97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363
            +G K+HLKRL AP  W +++    +A +P  GPH  R  +PL+ I+R+ L YA T RE   IL +   LVD +VR D  +P G MD  S
Sbjct:    4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVS 92          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MD
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMD 89          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MD
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMD 89          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            +G +KHLKRL AP +W L +   AF  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MD
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMD 89          
The following BLAST results are available for this feature:
BLAST of CN188730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS4E_PYRKO2.368e-1444.9430S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]
RS4E_PYRHO3.093e-1444.9430S ribosomal protein S4e OS=Pyrococcus horikoshii... [more]
RS4E_META33.093e-1444.1930S ribosomal protein S4e OS=Methanococcus aeolicu... [more]
RS4E_HYPBU3.093e-1443.8230S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_STAMF5.276e-1447.1930S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_PYRFU8.999e-1443.8230S ribosomal protein S4e OS=Pyrococcus furiosus G... [more]
RS4E_PYRAB8.999e-1443.8230S ribosomal protein S4e OS=Pyrococcus abyssi GN=... [more]
RS4E_METM71.175e-1344.1930S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM61.175e-1344.1930S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_METM51.175e-1344.1930S ribosomal protein S4e OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006K14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188730 ID=CN188730; Name=CN188730; organism=Citrus sinensis; type=EST; length=874bp
CCCCGCTGAGAGTGATTTTTACTTCGTTTTTGTTTTGCAGGACTGTGACA
CGCCGTTGGCGAATCCAAGCTCAGGCTCACGAACACAAAAATGGCGAGAG
GTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCACTGGATGCTT
GACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCACACAA
ATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGCAACCGCTTGAAGT
ATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCAACGACATGTG
TTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTGCTGGGTTCAT
GGATGCGGGCTCAAAATCATACTTGTGTTCATGATGATTCCTCCATTTCT
GATATCATATTCCAAATTTAAGCCTCCTTGATTTACTCTTTCTTTAAGAA
GTTTTTTAAGATTTTTCACTTGTCCTTTTGACTATCAGATGTTGTGTCAA
TTCCAAAGACGAATGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGG
TTCCGCCTTCATTCAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAA
GGTTCGATCAGTGCAATTTGGGCAGAAGGGAATCCCTTACATCAACACTT
ATGATGGGAGGACTATTCGCTACCCAGACCCACTCATCAAGGCCAATGAT
ACCATCAAGCTGGACCTGGAGACTAACAAGATCACCGAGTTCATCAAGTT
TGATGTTGGAAATGTTGTGATGGTGACTGGAGGGAGAAACAGAGGACGTG
TTGGAATCATTAAGAACAGAGAAAAGCATAAGGGTAGCTTTTGAACTATC
CACATCCAGGATGCTCTTGGTCAT
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