CN188730
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.368e-14 Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363 +G K+HLKRL AP W + + +A +PS GPH + +PLI I+R+ L YA T RE IL + +LVD +VR D +P G MD S Sbjct: 4 KGPKRHLKRLAAPTSWYIHRKAYKWAVRPSPGPHSMKTSIPLIYIVRDYLGYAKTAREARKILNEGKILVDGRVRKDYKFPVGIMDVVS 92
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_PYRHO (30S ribosomal protein S4e OS=Pyrococcus horikoshii GN=rps4e PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14 Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 1 Query: 97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363 +G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T RE IL + LVD KVR D +P G MD S Sbjct: 4 KGPKRHLKRLAAPSSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGKVRKDYKFPVGIMDVVS 92
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14 Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 +G +KHLKRL APK+W + + + +PS+GPH LPL+L+LR+ L YA RE ++ VLVD R D YP G MD Sbjct: 4 KGPRKHLKRLPAPKNWQISRKTNKYTTRPSAGPHAMGSSLPLLLVLRDLLGYADNAREAKKVIKMGKVLVDGVKRKDHRYPTGLMD 89
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 3.093e-14 Identity = 39/89 (43.82%), Postives = 55/89 (61.80%), Query Frame = 1 Query: 91 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 MAR G ++HLK L APK W + + G F KPS GPH +PL++++R+ L YA T RE ++ + H +D +VR + YP GFMD Sbjct: 1 MARMGGRRHLKTLAAPKFWPVRQRAGIFTVKPSPGPHPIERSIPLLILVRDVLGYAKTAREARKLIAEGHFKIDGRVRRNYKYPVGFMD 89
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 5.276e-14 Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 91 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 MAR G KKHLK L APK W + + +A KPS GPH C PL++I+R+ L YA T RE ++ + H VD +VR + YP G MD Sbjct: 1 MARMGGKKHLKALVAPKFWPILRKEYKWAVKPSPGPHPIERCFPLLIIVRDILGYAKTAREARKLISEGHFKVDGRVRKNYKYPVGLMD 89
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_PYRFU (30S ribosomal protein S4e OS=Pyrococcus furiosus GN=rps4e PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 8.999e-14 Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1 Query: 97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363 +G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T RE IL + LVD +VR D +P G MD S Sbjct: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVS 92
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_PYRAB (30S ribosomal protein S4e OS=Pyrococcus abyssi GN=rps4e PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 8.999e-14 Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1 Query: 97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363 +G K+HLKRL AP W +++ +A +P GPH R +PL+ I+R+ L YA T RE IL + LVD +VR D +P G MD S Sbjct: 4 KGPKRHLKRLAAPTSWYIERKAYKWAVRPRPGPHNMRTSIPLLYIVRDYLGYAKTAREARKILNEGKFLVDGRVRKDYKFPVGIMDVVS 92
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METM7 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps4e PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13 Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 +G +KHLKRL AP +W L + AF +PS GPH + LPL+L++R+ LKYA RE I+ +L+D R + +PAG MD Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMD 89
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METM6 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps4e PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13 Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 +G +KHLKRL AP +W L + AF +PS GPH + LPL+L++R+ LKYA RE I+ +L+D R + +PAG MD Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDILKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMD 89
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METM5 (30S ribosomal protein S4e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps4e PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.175e-13 Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1 Query: 97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 +G +KHLKRL AP +W L + AF +PS GPH + LPL+L++R+ LKYA RE I+ +L+D R + +PAG MD Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKAFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMD 89 The following BLAST results are available for this feature:
BLAST of CN188730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188730 ID=CN188730; Name=CN188730; organism=Citrus sinensis; type=EST; length=874bpback to top |