CN188730
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.420e-13 Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1 Query: 97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 +G +KHLKRL AP +W L + F +PS GPH + LPL+L++R+ LKYA RE I+ +L+D R + +PAG MD Sbjct: 4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMD 89
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.300e-12 Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1 Query: 91 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 MAR G K+HLKRL AP W + + +A KP GPH E +PL++++R+ L YA T RE ++ + + VD +VR D +P G MD Sbjct: 1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMD 90
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12 Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 1 Query: 97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363 +G K+HLKRL AP W L + F +P G H E LPL+LI+R+ LKYA RE I+ VLVD +VR ++ P G MD S Sbjct: 4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVS 92 HSP 2 Score: 70.4774 bits (171), Expect = 1.437e-11 Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRG 796 DVVS+P NEN+R+L+D KGR +L E KLCK+++ + G +N +DGR I+ DP + K DT+ + + +I I F+VG + +TGG++ G Sbjct: 89 DVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVG 197
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.217e-12 Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1 Query: 112 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 HL+R +P+ W +++ G ++ KPS GPH + +PL ++LR+ YA T RE I+ + +V VD KVR D YP G MD Sbjct: 3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMD 83
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 2.217e-12 Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1 Query: 91 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 MAR G ++ LK L AP+ W + + +A KP GPH + + LPL+LI+RN L YA T RE ++ + H VD VR D +P GFMD Sbjct: 1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMD 89 HSP 2 Score: 69.707 bits (169), Expect = 2.451e-11 Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF*T-IHIQDALGH 874 DV+ + T E FR+L F+LH I +EE K ++ + + G +N +DGR I R DP + + DT+ + + +I IKF G + ++ GGRN GRVG++K+ +K G T + ++DA G+ Sbjct: 89 DVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGN 226
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12 Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 1 Query: 97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 +G +KHLKRL AP +W L + F +PS GPH + LPL+LI+R+ LK A RE I+ +L+D R + +P G MD Sbjct: 4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMD 89
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12 Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 1 Query: 97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 +G +KHLKRL AP +W L + F +PS GPH + LPL+LI+R+ LK A RE I+ +L+D R + +P G MD Sbjct: 4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMD 89
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.781e-12 Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1 Query: 100 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 G +KHLKR APK W + K + K S+GPH E +PL+++LR+ L A RE IL VLVD R + +P GFMD Sbjct: 5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMD 89 HSP 2 Score: 72.0182 bits (175), Expect = 4.938e-12 Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 811 DV+SIPK N+ FR+L D KGR L I ++++ FKL K+ + G +N GR I D K D + L++ KI++ IKF+ G + ++TGG++ VG I Sbjct: 89 DVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKI 195
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.437e-11 Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1 Query: 100 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354 G K+H+KRL AP W + K GG FAP+P GPH +PL++++R+ L YA RE I+ + + VD VR + +P G MD Sbjct: 7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMD 92
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.451e-11 Identity = 38/110 (34.55%), Postives = 65/110 (59.09%), Query Frame = 2 Query: 488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKN 817 DVV+IPK +++R+L+D KGR+ + E+A KL K+ + + G +N +DG I + K D+I L + ++ + +KF+ G +VM+TGG + G +G IK+ Sbjct: 84 DVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSNDY-KTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRIKS 190 The following BLAST results are available for this feature:
BLAST of CN188730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 75
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188730 ID=CN188730; Name=CN188730; organism=Citrus sinensis; type=EST; length=874bpback to top |