CN188730

Overview
NameCN188730
Unique NameCN188730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METMP (30S ribosomal protein S4e OS=Methanococcus maripaludis GN=rps4e PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.420e-13
Identity = 37/86 (43.02%), Postives = 52/86 (60.47%), Query Frame = 1
Query:   97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+L++R+ LKYA   RE   I+    +L+D   R +  +PAG MD
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKVKTFTVRPSPGPHSMDKSLPLLLVVRDVLKYADNAREAKKIIQTGKILIDGLKRKEYKHPAGLMD 89          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_IGNH4 (30S ribosomal protein S4e OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.300e-12
Identity = 38/90 (42.22%), Postives = 54/90 (60.00%), Query Frame = 1
Query:   91 MAR--GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            MAR  G K+HLKRL AP  W + +    +A KP  GPH   E +PL++++R+ L YA T RE   ++ +  + VD +VR D  +P G MD
Sbjct:    1 MARVGGGKRHLKRLAAPAFWPIHRKEAVWAVKPRPGPHPIEESIPLLILVRDVLGYAETSREARKLIAEGRIKVDGRVRKDYKFPVGAMD 90          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.697e-12
Identity = 40/89 (44.94%), Postives = 51/89 (57.30%), Query Frame = 1
Query:   97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMDAGS 363
            +G K+HLKRL AP  W L +    F  +P  G H   E LPL+LI+R+ LKYA   RE   I+    VLVD +VR ++  P G MD  S
Sbjct:    4 KGPKRHLKRLAAPVRWELPRKIHKFTVRPLPGAHPMSESLPLLLIVRDILKYADNAREAKKIIKMGKVLVDGRVRKEEKLPVGLMDVVS 92          

HSP 2 Score: 70.4774 bits (171), Expect = 1.437e-11
Identity = 40/111 (36.04%), Postives = 62/111 (55.86%), Query Frame = 2
Query:  488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRG 796
            DVVS+P  NEN+R+L+D KGR +L     E    KLCK+++    + G   +N +DGR   I+  DP      + K  DT+ + +   +I   I F+VG +  +TGG++ G
Sbjct:   89 DVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVG 197          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_CALMQ (30S ribosomal protein S4e OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps4e PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.217e-12
Identity = 34/81 (41.98%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  112 HLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            HL+R  +P+ W +++ G  ++ KPS GPH +   +PL ++LR+   YA T RE   I+ + +V VD KVR D  YP G MD
Sbjct:    3 HLRRSTSPEWWPVERKGAPWSIKPSPGPHPANSSIPLAVLLRDVFHYAKTLREARLIIGKGYVKVDGKVRRDYKYPVGLMD 83          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 2.217e-12
Identity = 40/89 (44.94%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   91 MAR-GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            MAR G ++ LK L AP+ W + +    +A KP  GPH + + LPL+LI+RN L YA T RE   ++ + H  VD  VR D  +P GFMD
Sbjct:    1 MARMGGQRRLKALAAPRFWPILRKEYKWAVKPRPGPHPAEKSLPLLLIVRNVLGYAQTAREARKLISEGHFRVDGVVRKDYKFPVGFMD 89          

HSP 2 Score: 69.707 bits (169), Expect = 2.451e-11
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 2
Query:  488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKNREKHKGSF*T-IHIQDALGH 874
            DV+ +  T E FR+L      F+LH I +EE   K  ++ +    + G   +N +DGR I  R  DP      + +  DT+ + +   +I   IKF  G + ++ GGRN GRVG++K+ +K  G   T + ++DA G+
Sbjct:   89 DVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGN 226          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METVS (30S ribosomal protein S4e OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps4e PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MD
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMD 89          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METVA (30S ribosomal protein S4e OS=Methanococcus vannielii GN=rps4e PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.895e-12
Identity = 36/86 (41.86%), Postives = 50/86 (58.14%), Query Frame = 1
Query:   97 RGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            +G +KHLKRL AP +W L +    F  +PS GPH   + LPL+LI+R+ LK A   RE   I+    +L+D   R +  +P G MD
Sbjct:    4 KGPRKHLKRLAAPANWQLPRKERTFTVRPSPGPHSMDKSLPLLLIVRDTLKCADNAREAKKIIQMGKILIDGVKRKEYKHPVGLMD 89          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.781e-12
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1
Query:  100 GLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            G +KHLKR  APK W + K    +  K S+GPH   E +PL+++LR+ L  A   RE   IL    VLVD   R +  +P GFMD
Sbjct:    5 GSRKHLKRFKAPKMWPIHKKEEVWTTKTSAGPHALEESIPLVMVLRDILGLAANSREAKIILNNSDVLVDGIPRKNHRFPVGFMD 89          

HSP 2 Score: 72.0182 bits (175), Expect = 4.938e-12
Identity = 41/108 (37.96%), Postives = 62/108 (57.41%), Query Frame = 2
Query:  488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGII 811
            DV+SIPK N+ FR+L D KGR  L  I ++++ FKL K+      + G   +N   GR I   D   K  D + L++   KI++ IKF+ G + ++TGG++   VG I
Sbjct:   89 DVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKI 195          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_METKA (30S ribosomal protein S4e OS=Methanopyrus kandleri GN=rps4e PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.437e-11
Identity = 36/86 (41.86%), Postives = 51/86 (59.30%), Query Frame = 1
Query:  100 GLKKHLKRLNAPKHWMLD-KLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMD 354
            G K+H+KRL AP  W +  K GG FAP+P  GPH     +PL++++R+ L YA   RE   I+ +  + VD  VR +  +P G MD
Sbjct:    7 GPKRHVKRLAAPYAWPIPRKEGGKFAPRPYPGPHTMDTSVPLLILVRDMLGYADYAREARKIITRGEIYVDGVVRKEPKFPVGIMD 92          
BLAST of CN188730 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.451e-11
Identity = 38/110 (34.55%), Postives = 65/110 (59.09%), Query Frame = 2
Query:  488 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITEFIKFDVGNVVMVTGGRNRGRVGIIKN 817
            DVV+IPK  +++R+L+D KGR+    +  E+A  KL K+ +    + G   +N +DG  I   +   K  D+I L +   ++ + +KF+ G +VM+TGG + G +G IK+
Sbjct:   84 DVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSNDY-KTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRIKS 190          
The following BLAST results are available for this feature:
BLAST of CN188730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RS4E_METMP3.420e-1343.0230S ribosomal protein S4e OS=Methanococcus maripal... [more]
RS4E_IGNH41.300e-1242.2230S ribosomal protein S4e OS=Ignicoccus hospitalis... [more]
RS4E_METJA1.697e-1244.9430S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_CALMQ2.217e-1241.9830S ribosomal protein S4e OS=Caldivirga maquilinge... [more]
RS4E_AERPE2.217e-1244.9430S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_METVS2.895e-1241.8630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METVA2.895e-1241.8630S ribosomal protein S4e OS=Methanococcus vanniel... [more]
RS4E_METST3.781e-1243.5330S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_METKA1.437e-1141.8630S ribosomal protein S4e OS=Methanopyrus kandleri... [more]
RS4E_ARCFU2.451e-1134.5530S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006K14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188730 ID=CN188730; Name=CN188730; organism=Citrus sinensis; type=EST; length=874bp
CCCCGCTGAGAGTGATTTTTACTTCGTTTTTGTTTTGCAGGACTGTGACA
CGCCGTTGGCGAATCCAAGCTCAGGCTCACGAACACAAAAATGGCGAGAG
GTTTGAAGAAACATTTGAAGAGGCTTAATGCCCCAAAGCACTGGATGCTT
GACAAACTTGGTGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCACACAA
ATCAAGGGAGTGTTTGCCCTTAATTCTTATCTTACGCAACCGCTTGAAGT
ATGCTCTTACATACCGAGAAGTCATTGCAATTTTGATGCAACGACATGTG
TTGGTTGATGCTAAGGTTCGCACAGATAAGACTTACCCTGCTGGGTTCAT
GGATGCGGGCTCAAAATCATACTTGTGTTCATGATGATTCCTCCATTTCT
GATATCATATTCCAAATTTAAGCCTCCTTGATTTACTCTTTCTTTAAGAA
GTTTTTTAAGATTTTTCACTTGTCCTTTTGACTATCAGATGTTGTGTCAA
TTCCAAAGACGAATGAGAACTTCCGTCTCCTTTACGACACCAAGGGCCGG
TTCCGCCTTCATTCAATCAGGGATGAGGAGGCTAAGTTCAAGCTCTGCAA
GGTTCGATCAGTGCAATTTGGGCAGAAGGGAATCCCTTACATCAACACTT
ATGATGGGAGGACTATTCGCTACCCAGACCCACTCATCAAGGCCAATGAT
ACCATCAAGCTGGACCTGGAGACTAACAAGATCACCGAGTTCATCAAGTT
TGATGTTGGAAATGTTGTGATGGTGACTGGAGGGAGAAACAGAGGACGTG
TTGGAATCATTAAGAACAGAGAAAAGCATAAGGGTAGCTTTTGAACTATC
CACATCCAGGATGCTCTTGGTCAT
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