CN181794

Overview
NameCN181794
Unique NameCN181794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.548e-21
Identity = 49/161 (30.43%), Postives = 91/161 (56.52%), Query Frame = 2
Query:  140 SKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            S++ +    Y  + I +L+LQVR        LEA +  L   +  L+ E+  L++P ++ G +++++ +++ +V+ +   ++VV            P  RVAL   +  +  +LPS+ DP V   +V + P  +Y+ IGGLD+Q++E++E IELP+KHP +
Sbjct:   11 SEEYDDYIMYLKKRIRQLELQVRT-------LEADKERLERELSRLRMEMSRLRQPPAFAGTLIELLDEDRAIVQNYNGPRFVVRIAPWIERENLKPGARVALDQRTMAIVELLPSEKDPSVLGFEVIERPTVSYNDIGGLDKQLQELREAIELPLKHPEL 164          

HSP 2 Score: 31.5722 bits (70), Expect = 9.548e-21
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE +GI  P+GVLLY
Sbjct:  162 PELFEKVGIEPPKGVLLY 179          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.615e-20
Identity = 46/151 (30.46%), Postives = 85/151 (56.29%), Query Frame = 2
Query:  170 YLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            Y  +I  L+ ++RQ    +  LEA +  L   +  L+ E+  L++P ++ G V++V+  ++ +V+ +   ++VV            P +RVAL   +  +  +LP++ DP V   +V + P  TY  IGGL++Q+ E++E +ELP+KHP +
Sbjct:   13 YEDYITFLKRRIRQLELQVRTLEADKERLERELSRLRTEMSRLRQPPAFAGTVIEVLDDDRAIVQNYNGPRFVVRIAPWIERDKLKPGSRVALDQRTMAIVELLPTEKDPSVLGFEVIEKPRVTYQDIGGLERQLAELREAVELPLKHPEL 163          

HSP 2 Score: 31.5722 bits (70), Expect = 1.615e-20
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE +GI  P+GVLLY
Sbjct:  161 PELFEKVGIEPPKGVLLY 178          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.728e-20
Identity = 55/170 (32.35%), Postives = 90/170 (52.94%), Query Frame = 2
Query:  143 KQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRM-------LKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            K+ E L +    H  +L+++ R++      LE +R+E   L   +R        L+ +LQ +++P   VG V +++   +V+VK     K+V             P   VAL   S  +  +LPS+ D  V  M+V++ PD +YD IGGLD+QI+EI+EV+E P+K P +
Sbjct:   35 KRLEELERKLRAHEEKLRIEARRRKTLEKELEMERDEKAELREELRRKEVMIEKLRSDLQRMKKPPLIVGTVEEILDDGRVIVKSSTGPKFVSNVSPTVDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIREVVEKPLKEPEL 204          

HSP 2 Score: 31.187 bits (69), Expect = 2.728e-20
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE +G+  P+GVLLY
Sbjct:  202 PELFEKVGVEPPKGVLLY 219          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.719e-19
Identity = 49/165 (29.70%), Postives = 83/165 (50.30%), Query Frame = 2
Query:  149 GEGLRQYYLQHIH-------ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            GE + QY L+ I        EL+ Q RQ       +E Q+      +R LK E++ L+ P   +G V  V+  ++V+V+     +++V            P  R  L   S  +  +LP+  D  +  M++ + P+ TY+ IGGL+ QI+EI+E +ELP+  P++
Sbjct:   14 GEDIYQYLLERITNLENRNLELREQFRQMESEKRYVETQKIRYERELRKLKSEIEQLRSPPLVIGTVTDVIDNSRVIVRSSAGPRFLVRTSQLIDPDLLKPGVRCTLNQQSLAIVDVLPTSYDAQIYGMELVESPEETYENIGGLEPQIEEIREAVELPLTKPQL 178          

HSP 2 Score: 31.187 bits (69), Expect = 1.719e-19
Identity = 12/18 (66.67%), Postives = 16/18 (88.89%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            P+LFE +GI+ P+GVLLY
Sbjct:  176 PQLFEKVGISPPKGVLLY 193          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.908e-19
Identity = 51/169 (30.18%), Postives = 86/169 (50.89%), Query Frame = 2
Query:  143 KQGEGLRQYYLQHIH-------ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRIVR 628
            ++GE L +Y L+ +        EL+ Q+RQ   +   LE Q+      VR  K E++ ++ P   +G V  ++ +N+V+V+     +++V            P  R  L   S  +  ILP+  D  +  M+V + P   Y+ IGGL++QI EI+E +ELP+K P + R
Sbjct:   12 QKGEDLYRYLLERVTNLEDRNTELREQLRQIEADKRYLETQKVRYEREVRKFKGEIEQMKSPPLVIGTVTDLIDENRVIVRSSAGPRFLVGISQSLNIEEIKPGARCTLNQQSLAIVEILPTNYDAQIYGMEVIEAPSERYEEIGGLEKQINEIREAVELPLKKPEVFR 180          

HSP 2 Score: 26.9498 bits (58), Expect = 2.908e-19
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PE+F  +GI  P+GVLL+
Sbjct:  176 PEVFRKMGIEPPKGVLLH 193          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.784e-19
Identity = 52/165 (31.52%), Postives = 85/165 (51.52%), Query Frame = 2
Query:  149 GEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSR-------VRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            G+   QY L+ + +L+    +      RLE ++  + S        VR L+ E++ L+ P   VG V  ++   +V+VK     K+VV            P  RVAL   +  +  +LP+  DP+V   +VE+ P+ +Y+ IGGLD QI+EI+E +ELP+  P +
Sbjct:    2 GDSEIQYLLEKLKKLEEDYYKLRELYRRLEDEKKFIESERIRYEREVRRLRSEVERLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYINEEELKPGARVALNQQTLAIVNVLPTSKDPMVYGFEVEEKPEVSYEDIGGLDVQIEEIREAVELPLLKPEL 166          

HSP 2 Score: 29.261 bits (64), Expect = 3.784e-19
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELF  +GI  P+GVLLY
Sbjct:  164 PELFAEVGIEPPKGVLLY 181          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.826e-18
Identity = 47/145 (32.41%), Postives = 72/145 (49.66%), Query Frame = 2
Query:  188 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            EL+ Q+RQ   +   +E Q+      VR LK E + L+ P   +G VV V+  N+V+V+     +++V            P  R  L   S  +  +LPS  D  V  M++   P   Y  IGGL +QI E++E +ELP+K P +
Sbjct:   59 ELREQIRQAEADKRYIETQKIRYEREVRKLKSESEQLRSPPLIIGTVVDVVDANRVIVRSSAGPRFLVRSSPSVNPDDIKPGARCTLNQQSLAIVELLPSSFDAQVYGMELVDSPQECYTDIGGLKEQINEVREAVELPLKRPEL 203          

HSP 2 Score: 29.6462 bits (65), Expect = 1.826e-18
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELF  +GI  P+GVLLY
Sbjct:  201 PELFTQIGIEPPKGVLLY 218          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_METJA (Proteasome-activating nucleotidase OS=Methanocaldococcus jannaschii GN=pan PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.375e-18
Identity = 46/147 (31.29%), Postives = 77/147 (52.38%), Query Frame = 2
Query:  182 IHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            I EL+ ++ +       LE +  +L     +L+ EL  ++ P   VG VV  +G+ KV+VK      ++V            P  RV L   +  +  +LP   D     M+V++ P+  Y+ IGGL++Q++EI+EV+ELP+KHP +
Sbjct:   49 IAELESRILKLELEKKELERENLQLMKENEILRRELDRMRVPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHFVNPDDLAPGKRVCLNQQTLTVVDVLPENKDYRAKAMEVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPEL 195          

HSP 2 Score: 31.187 bits (69), Expect = 2.375e-18
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE +GI  P+G+LLY
Sbjct:  193 PELFEKVGIEPPKGILLY 210          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 5.233e-18
Identity = 49/157 (31.21%), Postives = 80/157 (50.96%), Query Frame = 2
Query:  152 EGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            E  + Y LQH        R+    L  L     +L  +    +++++ LQ  G  +GEV+K +   + +VK     +YVV               RV+L   +  +  ILP +VDPLV  M +E   D ++  +GGL++QI+E++EVIELP+K+P +
Sbjct:    9 EKYKSYLLQH--------REWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSERFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPEL 157          

HSP 2 Score: 28.1054 bits (61), Expect = 5.233e-18
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELF  +GI  P+GVLLY
Sbjct:  155 PELFLRVGIKPPKGVLLY 172          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 56/167 (33.53%), Postives = 84/167 (50.30%), Query Frame = 2
Query:  161 RQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRIVRVSWNSSTQGCI 661
            R   LQ   +  L+ ++    L  L  Q  EL  +    + +L+ LQ  G  VGEV+K + + K +VK     +YVV            P TRVAL   +  +   LP +VDPLV  M  E   + +Y  IGGL +QI+E++EVIELP+ +P + +       +GC+
Sbjct:    5 RDKALQDYRKKLLEHKEIDGRLKELREQLKELTKQYEKSENDLKALQSVGQIVGEVLKQLTEEKFIVKATNGPRYVVGCRRQLDKSKLKPGTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCL 171          
The following BLAST results are available for this feature:
BLAST of CN181794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
PSMR_THEON9.548e-2130.43Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_THEGJ1.615e-2030.46Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_METKA2.728e-2032.35Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_METMJ1.719e-1929.70Proteasome-activating nucleotidase OS=Methanoculle... [more]
PSMR_METPE2.908e-1930.18Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR_ARCFU3.784e-1931.52Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PSMR_METB61.826e-1832.41Proteasome-activating nucleotidase OS=Methanoregul... [more]
PSMR_METJA2.375e-1831.29Proteasome-activating nucleotidase OS=Methanocaldo... [more]
PRS10_SCHPO5.233e-1831.21Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS10_SPETR1.105e-1733.5326S protease regulatory subunit S10B OS=Spermophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181794 ID=CN181794; Name=CN181794; organism=Citrus sinensis; type=EST; length=668bp
GAGGCGAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCG
TTCACTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAA
TCGGCGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGG
AGAGGGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCC
AAGTCCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAAC
GAACTCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCA
AGAGCCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATA
AGGTTCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGAT
AAAAGTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCG
TAATGACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCC
TGGTCAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATG
ATTGGTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCT
TCCTATCAAACATCCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCC
AGGGGTGTATTGCTATAT
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