CN181794

Overview
NameCN181794
Unique NameCN181794
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length668
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 79.7221 bits (195), Expect = 2.521e-17
Identity = 52/178 (29.21%), Postives = 89/178 (50.00%), Query Frame = 2
Query:   89 KQPESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            ++P    PE+    K  ++     ++  L+H      Q++Q+  N+  LE   ++  +       +++ LQ  G  +GEV+K + + K +VK     +Y+V               RV L   +  +  ILP + DPLV  M   +  + T+D IGGL +QI+E++EVIELP+K+P I
Sbjct:   41 EEPSRVDPEQEAHNKALNQ----FKRKLLEH-RRYDDQLKQRRQNIRDLEKLYDKTEN-------DIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEI 206          

HSP 2 Score: 29.261 bits (64), Expect = 2.521e-17
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PE+F+ +GI  P+GVLLY
Sbjct:  204 PEIFQRVGIKPPKGVLLY 221          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.266e-17
Identity = 44/143 (30.77%), Postives = 71/143 (49.65%), Query Frame = 2
Query:  188 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 616
            EL+ Q+RQ   +   +E Q+      VR LK E++ L+ P   VG +  ++   +V+V+     +++V               R  L   S  +  +LPS  D  V  M++   P  TY+ IGGL++QI EI+E +ELP+  P
Sbjct:   34 ELKEQIRQLESDKRYIETQKIRYEREVRKLKSEIEHLKTPPLIVGTITDIIDSGRVVVRSSAGPRFLVRVSQAVNPTTLKAGVRCTLNQQSLAIVEVLPSTYDSQVYGMELVDAPTETYEDIGGLEKQIMEIREAVELPMTRP 176          

HSP 2 Score: 30.4166 bits (67), Expect = 4.266e-17
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            P+LFE +GI  P+GVLLY
Sbjct:  176 PDLFEKIGINPPKGVLLY 193          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_METMP (Proteasome-activating nucleotidase OS=Methanococcus maripaludis GN=pan PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.267e-17
Identity = 43/142 (30.28%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  197 LQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            L++  K  ++NR   Q  + N    +LK EL  L+ P   +G ++  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD +++ IGGL+ QI++IKEV+ELP+K+P +
Sbjct:   35 LRLELKNKDINRENVQIKKENE---ILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPEL 173          

HSP 2 Score: 31.9574 bits (71), Expect = 4.267e-17
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE +GI  P+GVLLY
Sbjct:  171 PELFEKVGIVPPKGVLLY 188          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.551e-17
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 2
Query:  188 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRIVR 628
            E+QL VR     +  L+ +   L   +   K E++ +  P      V+ V+   +VLV+       VV            P   VAL      +  +LP K DP+V  M++ + P+ TY  IGGL++QI+E++EV+ELP+K+P I R
Sbjct:   16 EVQL-VRLLEEKIKSLQIEIENLRKELNYYKAEMEKMLSPPLIEAVVLDVLPDGRVLVRSSSGPNLVVNIASHIDQKLIKPGISVALNQRGSTILEVLPQKEDPIVKTMEIIERPNVTYSEIGGLEEQIRELREVVELPLKNPEIFR 161          

HSP 2 Score: 28.8758 bits (63), Expect = 5.551e-17
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PE+F  +G+  P+GVLLY
Sbjct:  157 PEIFREIGVEPPKGVLLY 174          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_METVS (Proteasome-activating nucleotidase OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=pan PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.059e-16
Identity = 45/151 (29.80%), Postives = 75/151 (49.67%), Query Frame = 2
Query:  170 YLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            YL  +    L++  K  ++ R   Q  + N    +LK EL  L+ P   +G V+  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD  +  IGGL+ QI++IKEV+ELP+K+P +
Sbjct:   26 YLAELESKVLRLELKNKDITRENVQIKKENE---ILKRELDKLRIPPLILGTVLDRVNERKAVVKSSTGPNFLVNLSQFVEPDDIVPGARVCLNQQTLAVVEVLPKEKDYRAMAMELEEKPDILFGDIGGLNNQIRDIKEVVELPLKNPEL 173          

HSP 2 Score: 31.9574 bits (71), Expect = 2.059e-16
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE +GI  P+GVLLY
Sbjct:  171 PELFEKVGIVPPKGVLLY 188          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_METM6 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=pan PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.059e-16
Identity = 42/142 (29.58%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  197 LQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            L++  K  +++R   Q  + N    +LK EL  L+ P   +G ++  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD +++ IGGL+ QI++IKEV+ELP+K+P +
Sbjct:   35 LRLELKNKDISRENVQIKKENE---ILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPEL 173          

HSP 2 Score: 31.9574 bits (71), Expect = 2.059e-16
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE +GI  P+GVLLY
Sbjct:  171 PELFEKVGIVPPKGVLLY 188          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_METM5 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=pan PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.059e-16
Identity = 42/142 (29.58%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  197 LQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            L++  K  +++R   Q  + N    +LK EL  L+ P   +G ++  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD +++ IGGL+ QI++IKEV+ELP+K+P +
Sbjct:   35 LRLELKNKDISRENVQIKKENE---ILKRELDKLRIPPLILGTILDRVNERKAVVKSSTGPNFLVNLSQFVDPDDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPEL 173          

HSP 2 Score: 31.9574 bits (71), Expect = 2.059e-16
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE +GI  P+GVLLY
Sbjct:  171 PELFEKVGIVPPKGVLLY 188          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_METM7 (Proteasome-activating nucleotidase OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=pan PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.676e-16
Identity = 42/142 (29.58%), Postives = 74/142 (52.11%), Query Frame = 2
Query:  197 LQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            L++  K  ++ R   Q  + N    +LK EL  L+ P   +G ++  + + K +VK      ++V            P  RV L   +  +  +LP + D     M++E+ PD +++ IGGL+ QI++IKEV+ELP+K+P +
Sbjct:   35 LRLELKNKDVTRENVQIKKENE---ILKRELDKLRIPPLILGTILDKVNERKAVVKSSTGPNFLVNLSQFVDPEDIVPGARVCLNQQTLAIVEVLPKEKDYRAMAMEIEEKPDISFEDIGGLNNQIRDIKEVVELPLKNPEL 173          

HSP 2 Score: 31.9574 bits (71), Expect = 2.676e-16
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELFE +GI  P+GVLLY
Sbjct:  171 PELFEKVGIVPPKGVLLY 188          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.677e-16
Identity = 48/162 (29.63%), Postives = 82/162 (50.62%), Query Frame = 2
Query:  137 ASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            A ++   +  Y  + +H  +L+ R +T   N L A + E N      +++L+ LQ  G  +GEV++ +   +++VK     +YVV              TRV L   +  +   LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+ +P +
Sbjct:    8 ARRRTAAVTDYRKKLLHHKELESRVRTAREN-LRAAKKEFNKT----EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPEL 164          

HSP 2 Score: 28.1054 bits (61), Expect = 2.677e-16
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELF  +GI  P+GVLLY
Sbjct:  162 PELFLRVGIKPPKGVLLY 179          
BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.640e-16
Identity = 48/154 (31.17%), Postives = 79/154 (51.30%), Query Frame = 2
Query:  161 RQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRI 622
            R+  LQH  EL+ +VR    NL   + + N+        +++L+ LQ  G  +GEV++ +   +++VK     +YVV              TRV L   +  +   LP +VDP+V  M  E   + +Y  +GGL  QI+E++E IELP+ +P +
Sbjct:   19 RKKLLQH-KELESRVRTARENLRGAKKEFNKT-------EDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPEL 164          

HSP 2 Score: 28.1054 bits (61), Expect = 7.640e-16
Identity = 12/18 (66.67%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  615 PELFESLGIAQPRGVLLY 668
            PELF  +GI  P+GVLLY
Sbjct:  162 PELFLRVGIKPPKGVLLY 179          
The following BLAST results are available for this feature:
BLAST of CN181794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99
Match NameE-valueIdentityDescription
PRS10_YEAST2.521e-1729.2126S protease subunit RPT4 OS=Saccharomyces cerevis... [more]
PSMR_METHJ4.266e-1730.77Proteasome-activating nucleotidase OS=Methanospiri... [more]
PSMR_METMP4.267e-1730.28Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_SULSO5.551e-1731.97Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_METVS2.059e-1629.80Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM62.059e-1629.58Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM52.059e-1629.58Proteasome-activating nucleotidase OS=Methanococcu... [more]
PSMR_METM72.676e-1629.58Proteasome-activating nucleotidase OS=Methanococcu... [more]
PS10B_ARATH2.677e-1629.6326S protease regulatory subunit S10B homolog B OS=... [more]
PS10A_ARATH7.640e-1631.1726S protease regulatory subunit 10B homolog A OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001H20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181794 ID=CN181794; Name=CN181794; organism=Citrus sinensis; type=EST; length=668bp
GAGGCGAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCG
TTCACTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAA
TCGGCGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGG
AGAGGGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCC
AAGTCCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAAC
GAACTCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCA
AGAGCCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATA
AGGTTCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGAT
AAAAGTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCG
TAATGACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCC
TGGTCAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATG
ATTGGTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCT
TCCTATCAAACATCCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCC
AGGGGTGTATTGCTATAT
back to top