CN181794 | Citrus Genome Database

Overview


Name	CN181794
Unique Name	CN181794
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	668

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 71.633 bits (174), Expect = 3.876e-14
Identity = 45/158 (28.48%), Postives = 77/158 (48.73%), Query Frame = 2

Query:  170 YLQHIHELQLQVRQKTHNLNRL----EAQRNELNSRVRMLKEELQLLQ-EPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 616
            Y + I +++  ++Q    +N L    E+        +  L  + Q LQ E    V    K++  +    K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HP
Sbjct:   41 YSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHP 198

HSP 2 Score: 26.5646 bits (57), Expect = 3.876e-14
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  615 PELFESLGIAQPRGVLLY 668
            PE F +LGI  P+GVLL+
Sbjct:  198 PERFVNLGIEPPKGVLLF 215

[Close]

BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.876e-14
Identity = 45/158 (28.48%), Postives = 77/158 (48.73%), Query Frame = 2

Query:  170 YLQHIHELQLQVRQKTHNLNRL----EAQRNELNSRVRMLKEELQLLQ-EPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 616
            Y + I +++  ++Q    +N L    E+        +  L  + Q LQ E    V    K++  +    K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HP
Sbjct:   41 YSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHP 198

HSP 2 Score: 26.5646 bits (57), Expect = 3.876e-14
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  615 PELFESLGIAQPRGVLLY 668
            PE F +LGI  P+GVLL+
Sbjct:  198 PERFVNLGIEPPKGVLLF 215

[Close]

BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.876e-14
Identity = 45/158 (28.48%), Postives = 77/158 (48.73%), Query Frame = 2

Query:  170 YLQHIHELQLQVRQKTHNLNRL----EAQRNELNSRVRMLKEELQLLQ-EPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 616
            Y + I +++  ++Q    +N L    E+        +  L  + Q LQ E    V    K++  +    K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HP
Sbjct:   41 YSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHP 198

HSP 2 Score: 26.5646 bits (57), Expect = 3.876e-14
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  615 PELFESLGIAQPRGVLLY 668
            PE F +LGI  P+GVLL+
Sbjct:  198 PERFVNLGIEPPKGVLLF 215

[Close]

BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 3.876e-14
Identity = 45/158 (28.48%), Postives = 77/158 (48.73%), Query Frame = 2

Query:  170 YLQHIHELQLQVRQKTHNLNRL----EAQRNELNSRVRMLKEELQLLQ-EPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 616
            Y + I +++  ++Q    +N L    E+        +  L  + Q LQ E    V    K++  +    K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HP
Sbjct:   41 YSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHP 198

HSP 2 Score: 26.5646 bits (57), Expect = 3.876e-14
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  615 PELFESLGIAQPRGVLLY 668
            PE F +LGI  P+GVLL+
Sbjct:  198 PERFVNLGIEPPKGVLLF 215

[Close]

BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 6.542e-14
Identity = 45/158 (28.48%), Postives = 77/158 (48.73%), Query Frame = 2

Query:  170 YLQHIHELQLQVRQKTHNLNRL----EAQRNELNSRVRMLKEELQLLQ-EPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 616
            Y + I +++  ++Q    +N L    E+        +  L  + Q LQ E    V    K++  +    K ++ V    K+VV               RV +  + Y +H+ LP K+DP V +M+VE+ PD TY  +GG  +QI++++EV+E P+ HP
Sbjct:   41 YSRQIKQVEDDIQQLLKKINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIITADSEDPKYIINVKQFAKFVVDLSDQVAPTDIEEGMRVGVDRNKYQIHIPLPPKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLHP 198

HSP 2 Score: 26.5646 bits (57), Expect = 6.542e-14
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = 3

Query:  615 PELFESLGIAQPRGVLLY 668
            PE F +LGI  P+GVLL+
Sbjct:  198 PERFVNLGIEPPKGVLLF 215

[Close]

BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.545e-14
Identity = 43/158 (27.22%), Postives = 77/158 (48.73%), Query Frame = 2

Query:  170 YLQHIHELQLQVRQKTHNLNRLEAQRNE-----LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 616
            Y  HI + + +V+     +N L   +         S+  ++ ++  + +E    V    K++  N    K ++ V    K+VV               RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HP
Sbjct:   33 YSTHIKKAEKEVKDLAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHP 190

HSP 2 Score: 25.409 bits (54), Expect = 6.545e-14
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 3

Query:  615 PELFESLGIAQPRGVLLY 668
            PE F  LGI  P+GVL Y
Sbjct:  190 PEKFVKLGIDPPKGVLCY 207

[Close]

BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 1.107e-13
Identity = 44/157 (28.03%), Postives = 71/157 (45.22%), Query Frame = 2

Query:  158 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPRIVR 628
            L  Y  +H +     VR     +  L  +  +L   +   K EL+ L  P      V+ ++   KV+V+       +V            P + VAL      +  +LP + D  V   +V + P+  Y  IGGL++QI EI+EVIELP+K+P + +
Sbjct:    5 LDSYRAKHYNSDDPIVRLLEEKIESLTKELEKLRQDLNWYKGELEKLLAPPYIEAIVLDILPDGKVIVRSSSGPNLIVNVSSNIDIKKLKPGSLVALTQRGSTIVEVLPEREDAYVKSFEVIEKPNVHYSDIGGLNEQINEIREVIELPLKNPELFK 161

HSP 2 Score: 30.0314 bits (66), Expect = 1.107e-13
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 3

Query:  615 PELFESLGIAQPRGVLLY 668
            PELF+ +GI  P+GVLLY
Sbjct:  157 PELFKEIGIDPPKGVLLY 174

[Close]

BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.420e-13
Identity = 36/119 (30.25%), Postives = 63/119 (52.94%), Query Frame = 2

Query:  272 MLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 616
            ++ ++  + +E    V    K++  N    K ++ V    K+VV               RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HP
Sbjct:   73 LVSDKQMMQEEQPLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHP 191

HSP 2 Score: 25.409 bits (54), Expect = 2.420e-13
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 3

Query:  615 PELFESLGIAQPRGVLLY 668
            PE F  LGI  P+GVL Y
Sbjct:  191 PEKFVKLGIDPPKGVLCY 208

[Close]

BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.420e-13
Identity = 36/119 (30.25%), Postives = 63/119 (52.94%), Query Frame = 2

Query:  272 MLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 616
            ++ ++  + +E    V    K++  N    K ++ V    K+VV               RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HP
Sbjct:   73 LVSDKQMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHP 191

HSP 2 Score: 25.409 bits (54), Expect = 2.420e-13
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 3

Query:  615 PELFESLGIAQPRGVLLY 668
            PE F  LGI  P+GVL Y
Sbjct:  191 PEKFVKLGIDPPKGVLCY 208

[Close]

BLAST of CN181794 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.420e-13
Identity = 36/119 (30.25%), Postives = 63/119 (52.94%), Query Frame = 2

Query:  272 MLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHP 616
            ++ ++  + +E    V    K++  N    K ++ V    K+VV               RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HP
Sbjct:   73 LVSDKQMMQEEQPLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHP 191

HSP 2 Score: 25.409 bits (54), Expect = 2.420e-13
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 3

Query:  615 PELFESLGIAQPRGVLLY 668
            PE F  LGI  P+GVL Y
Sbjct:  191 PEKFVKLGIDPPKGVLCY 208

The following BLAST results are available for this feature:

BLAST of CN181794 vs. ExPASy Swiss-Prot

BLAST of CN181794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 99


Match Name	E-value	Identity	Description
PRS7_MOUSE	3.876e-14	28.48	26S protease regulatory subunit 7 OS=Mus musculus ...	[more]
PRS7_MACFA	3.876e-14	28.48	26S protease regulatory subunit 7 OS=Macaca fascic...	[more]
PRS7_HUMAN	3.876e-14	28.48	26S protease regulatory subunit 7 OS=Homo sapiens ...	[more]
PRS7_BOVIN	3.876e-14	28.48	26S protease regulatory subunit 7 OS=Bos taurus GN...	[more]
PRS7_PONAB	6.542e-14	28.48	26S protease regulatory subunit 7 OS=Pongo abelii ...	[more]
PRS7_PRUPE	6.545e-14	27.22	26S protease regulatory subunit 7 OS=Prunus persic...	[more]
PSMR_SULTO	1.107e-13	28.03	Proteasome-activating nucleotidase OS=Sulfolobus t...	[more]
PRS7_SPIOL	2.420e-13	30.25	26S protease regulatory subunit 7 OS=Spinacia oler...	[more]
PRS7_ORYSJ	2.420e-13	30.25	26S protease regulatory subunit 7 OS=Oryza sativa ...	[more]
PRS7A_ARATH	2.420e-13	30.25	26S protease regulatory subunit 7 homolog A OS=Ara...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0001H20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H20, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN181794 ID=CN181794; Name=CN181794; organism=Citrus sinensis; type=EST; length=668bp
GAGGCGAGACTTGATCCGAAAGACAATTAGATTCGAACAAATCGAACTCG
TTCACTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAA
TCGGCGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGG
AGAGGGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCC
AAGTCCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAAC
GAACTCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCA
AGAGCCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATA
AGGTTCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGAT
AAAAGTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCG
TAATGACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCC
TGGTCAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATG
ATTGGTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCT
TCCTATCAAACATCCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCC
AGGGGTGTATTGCTATAT