CN181793

Overview
NameCN181793
Unique NameCN181793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: FTSH_CHLVU (Cell division protease ftsH homolog OS=Chlorella vulgaris GN=ftsH PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.252e-12
Identity = 42/138 (30.43%), Postives = 78/138 (56.52%), Query Frame = -2
Query:  221 SEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRK 631
            +E Q ++L +LL +LDG +  N + +  ATNR ++LD ALLRPGR D+ ++   P ++ R++IL+ + + +   + +      E+  G + A+L  +  E+ + A+  +  H T E  E  + ++   E+EK   L+K
Sbjct: 1148 NEKQVSLLSQLLIELDGIQGRNGVVIFGATNRPEVLDPALLRPGRFDKIVKVGLPAQKKRVEILQFYGQTLGYQKTMPWAYFGERTVGFTAADLATLMNESALKAILNQSNH-TIETLEHGIERLTTSESEKYTVLKK 1284          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: MPA_MYCLE (Proteasome-associated ATPase OS=Mycobacterium leprae GN=mpa PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = -2
Query:  446 RMVRELFVMAREHA----PSIIFMDEIDSIGSARMESGSGNG-DSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDI 748
            R +R +F  ARE A    P I+F DE+DSI   R     G G  S+V+ T++ +LL+++DG E    + V+ A+NR D++D A+LRPGR+D KI+   P+ E+  DI
Sbjct:  347 RHIRLIFQRAREKASEGTPVIVFFDEMDSIFRTR-----GTGVSSDVETTVVPQLLSEIDGVEGLENVIVIGASNREDMIDPAILRPGRLDVKIKIERPDAEAAQDI 448          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: FTSH_OLTVI (Cell division protease ftsH homolog OS=Oltmannsiellopsis viridis GN=ftsH PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.941e-12
Identity = 44/153 (28.76%), Postives = 84/153 (54.90%), Query Frame = -2
Query:  245 DEIDSIGSARME-SGSGNGDSEVQRTMLE----LLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 688
            DE+++  S   + S   + + EV++  L     LL ++DG    N + V  ATNR ++LD AL+RPGR D+ +    P ++ R++ILK++++++   + I  +  A +  G S A+L A+  ++ + A+   + H T +  E  +  + K +T
Sbjct: 1474 DEMETRSSESTKASHESSNEMEVEKNQLSALIRLLVEMDGLNPLNGVIVFGATNRPEVLDPALIRPGRFDQILPIELPGKQKRVEILKLYAKKLGTAKSISWEYFANRTVGLSAADLAAIMNQSTILAVFNDQRH-TLKTLEYGLNIIYKPKT 1625          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: MSP1_YEAST (Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.558e-12
Identity = 49/148 (33.11%), Postives = 78/148 (52.70%), Query Frame = -2
Query:  311 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRG-IDLKKIAEKMNGASGAELKAVCTEAGMFALRE 748
            ++V  +F +A +  P IIF+DEIDS    R  +     D EV  T+  E +   DG   + ++ ++ ATNRI+ +D A LR  R+ ++     P  + R  IL +  +   L     DL+ IA+   G SG++LK +C EA + A +E
Sbjct:  172 KIVDAMFSLANKLQPCIIFIDEIDSFLRERSST-----DHEVTATLKAEFMTLWDGLLNNGRVMIIGATNRINDIDDAFLR--RLPKRFLVSLPGSDQRYKILSVLLKDTKLDEDEFDLQLIADNTKGFSGSDLKELCREAALDAAKE 312          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS2_METTM (Putative 26S protease regulatory subunit homolog MTH1011 OS=Methanobacterium thermoautotrophicum (strain Marburg / DSM 2133) PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.118e-11
Identity = 50/174 (28.74%), Postives = 89/174 (51.15%), Query Frame = -2
Query:  233 RMVRELFVMAREHAPSIIFMDEIDSIG-SARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMF-ALRERRIHVTQEDFEMAVAKVMKKETEKNM 748
            R + EL+ +A + APS+IF+DE+D+IG   R +S  G    +V   +  LL ++DG   +  +  + ATN  ++LD A+    R + +IEF  P ++ R  +L+ +   M L     + K+ +   G SG ++K    +  +  AL +    V +E  E A+ +   K   ++M
Sbjct:  203 RQIHELYELASKTAPSVIFIDEMDAIGLDRRFQSLRG----DVSEVVNALLTEMDGINQNWGVVTIGATNNPELLDNAI--RSRFEEEIEFKLPGDDERRMMLEKYIETMPLDVDFSVDKLVKLTKGMSGRDIKERVLKTALHRALADESPRVEREHIEYALKERDLKSEPRHM 370          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.547e-11
Identity = 51/149 (34.23%), Postives = 83/149 (55.70%), Query Frame = -2
Query:  311 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTM-LELLNQLDGF-EASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIH-SRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRE 748
            ++V++LF MARE+ PSIIF+DE+D++   R     G G+SE  R +  ELL Q++G    S  + VL ATN    LD A+ R  R +R+I  P P+  +R  + +I+      ++   D + +     G SG+++  V  +A M  +R+
Sbjct:  212 KLVKQLFAMARENKPSIIFIDEVDALTGTR-----GEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 353          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: YR476_MIMIV (Putative AAA family ATPase R476 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R476 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.245e-11
Identity = 42/145 (28.97%), Postives = 83/145 (57.24%), Query Frame = -2
Query:  284 IIFMDEIDSIGSARMESGSGNGDSEVQRTML-ELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRM----NLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFAL-RERRIHVTQED 700
            ++ +DEID    A + S SG+  + V+ +++ + L ++DG E  N +  +  TNR+++LD A +R GR    I+   P++E R+ I +IH++++     L   +D+ K+A      SGA+++ +   A +++L R  ++ V  +D
Sbjct:  676 MVVIDEID----AMLPSRSGSDGNPVRDSVVNQFLAEMDGLEVFNNLICIGITNRLELLDPATIRSGRFGIHIKIDLPDQEGRVKIFQIHTKKLQELNRLSDDVDISKLAVITEEFSGADIEGMVELASVYSLERLNKLDVINDD 816          
The following BLAST results are available for this feature:
BLAST of CN181793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 367
Match NameE-valueIdentityDescription
FTSH_CHLVU2.252e-1230.43Cell division protease ftsH homolog OS=Chlorella v... [more]
MPA_MYCLE2.941e-1242.06Proteasome-associated ATPase OS=Mycobacterium lepr... [more]
FTSH_OLTVI2.941e-1228.76Cell division protease ftsH homolog OS=Oltmannsiel... [more]
MSP1_YEAST8.558e-1233.11Protein MSP1 OS=Saccharomyces cerevisiae GN=MSP1 P... [more]
PRS2_METTM1.118e-1128.74Putative 26S protease regulatory subunit homolog M... [more]
VPS4_YEAST5.547e-1134.23Vacuolar protein sorting-associated protein 4 OS=S... [more]
YR476_MIMIV7.245e-1128.97Putative AAA family ATPase R476 OS=Acanthamoeba po... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181793 ID=CN181793; Name=CN181793; organism=Citrus sinensis; type=EST; length=749bp
CTTTTTTTTCCGAATTGATGCGAATTTAATTTAGATAAAATAGATTGCAA
ATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCT
AAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAG
GACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACAT
GGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTC
TTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACAT
GGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCC
TTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAA
ATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATAT
CAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATT
CGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGC
CATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGA
GCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCA
GATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAATGAT
AGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTG
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