CN181793

Overview
NameCN181793
Unique NameCN181793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 4.067e-46
Identity = 98/165 (59.39%), Postives = 122/165 (73.94%), Query Frame = -2
Query:  254 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 748
            RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD AL+RPGR+DRKIEF  P+ E R  I KIH+R M++ R I  + +A     ++GAE+++VCTEAGMFA+R RR   T++DF  AV KV+K
Sbjct:  255 RMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 184.882 bits (468), Expect = 4.067e-46
Identity = 98/165 (59.39%), Postives = 122/165 (73.94%), Query Frame = -2
Query:  254 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 748
            RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD AL+RPGR+DRKIEF  P+ E R  I KIH+R M++ R I  + +A     ++GAE+++VCTEAGMFA+R RR   T++DF  AV KV+K
Sbjct:  255 RMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 4.067e-46
Identity = 98/165 (59.39%), Postives = 122/165 (73.94%), Query Frame = -2
Query:  254 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 748
            RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD AL+RPGR+DRKIEF  P+ E R  I KIH+R M++ R I  + +A     ++GAE+++VCTEAGMFA+R RR   T++DF  AV KV+K
Sbjct:  255 RMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 4.067e-46
Identity = 98/165 (59.39%), Postives = 122/165 (73.94%), Query Frame = -2
Query:  254 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 748
            RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD AL+RPGR+DRKIEF  P+ E R  I KIH+R M++ R I  + +A     ++GAE+++VCTEAGMFA+R RR   T++DF  AV KV+K
Sbjct:  255 RMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 184.882 bits (468), Expect = 4.067e-46
Identity = 98/165 (59.39%), Postives = 122/165 (73.94%), Query Frame = -2
Query:  254 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 748
            RMVRELF MAR     +IF DEID+IG AR + G+G GD+EVQRTMLEL+NQLDGF+    IKVLMATNR D LD AL+RPGR+DRKIEF  P+ E R  I KIH+R M++ R I  + +A     ++GAE+++VCTEAGMFA+R RR   T++DF  AV KV+K
Sbjct:  255 RMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAG-GDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIK 418          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.067e-46
Identity = 91/178 (51.12%), Postives = 129/178 (72.47%), Query Frame = -2
Query:  218 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK-KETEKNMSLRKL 748
            R++RE+F  AR+H P +IFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+  +K+K++MATNR D+LD ALLRPGR+DRKIE P PNE  R+D+LKIH+  +     +D + IA+  +G + A+L+ VCTEAGMFA+R  R +V +EDF  AV K  + K+ E  +  +K+
Sbjct:  217 RVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRKCQEAKKLEGKLDYQKV 393          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.937e-46
Identity = 93/173 (53.76%), Postives = 126/173 (72.83%), Query Frame = -2
Query:  230 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMS 748
            R++RE+F  AREH P IIFMDEID+IG  R   G+ + D E+QRT++ELLNQLDGF+   K+K++MATNR D+LD ALLRPGR+DRKIE P PNE+SR++ILKIH+  +     ID + I +   G +GA+L+ +CTEAGMFA+R  R +V  EDF  AV K+ + +  ++ S
Sbjct:  219 RLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSS 390          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS6A_SOLLC (26S protease regulatory subunit 6A homolog OS=Solanum lycopersicum GN=TBP1 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.059e-46
Identity = 92/167 (55.09%), Postives = 125/167 (74.85%), Query Frame = -2
Query:  248 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 748
            ++VR+ F +A+E +P IIF+DEID+IG+ R +S   +GD EVQRTMLELLNQLDGF + ++IKV+ ATNR DILD AL+R GR+DRKIEFP+P EE+R  IL+IHSR+MN+   ++ +++A   +  +GA+LKAVC EAGM ALR     VT EDF   + +V  K+
Sbjct:  250 KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKK 415          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS6A_ORYSJ (26S protease regulatory subunit 6A homolog OS=Oryza sativa subsp. japonica GN=TBP1 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 9.059e-46
Identity = 92/167 (55.09%), Postives = 125/167 (74.85%), Query Frame = -2
Query:  248 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 748
            ++VR+ F +A+E +P IIF+DEID+IG+ R +S   +GD EVQRTMLELLNQLDGF +  +IKV+ ATNR DILD AL+R GR+DRKIEFP+P+EE+R  IL+IHSR+MN+   ++ +++A   +  +GA+LKAVC EAGM ALR     VT EDF   + +V  K+
Sbjct:  256 KLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPSEEARARILQIHSRKMNVNPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVTHEDFNEGIIQVQAKK 421          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 9.059e-46
Identity = 93/169 (55.03%), Postives = 130/169 (76.92%), Query Frame = -2
Query:  242 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 748
            ++VRELF +A E +PSI+F+DEID++G+ R ++ SG G+ E+QRTMLELLNQLDGF++   +KV++ATNRI+ LD ALLRPGRIDRKIEFP P+ ++R  I +IH+ +M L   ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT  DF+ A  KVM K+ E
Sbjct:  273 KLVRELFRVADELSPSIVFIDEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKEKVMFKKKE 440          
The following BLAST results are available for this feature:
BLAST of CN181793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 367
Match NameE-valueIdentityDescription
PRS7_RAT4.067e-4659.3926S protease regulatory subunit 7 OS=Rattus norveg... [more]
PRS7_MOUSE4.067e-4659.3926S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA4.067e-4659.3926S protease regulatory subunit 7 OS=Macaca fascic... [more]
PRS7_HUMAN4.067e-4659.3926S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN4.067e-4659.3926S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PRS10_DICDI4.067e-4651.1226S protease regulatory subunit S10B OS=Dictyostel... [more]
PS10B_ARATH6.937e-4653.7626S protease regulatory subunit S10B homolog B OS=... [more]
PRS6A_SOLLC9.059e-4655.0926S protease regulatory subunit 6A homolog OS=Sola... [more]
PRS6A_ORYSJ9.059e-4655.0926S protease regulatory subunit 6A homolog OS=Oryz... [more]
PRS4_ORYSJ9.059e-4655.0326S protease regulatory subunit 4 homolog OS=Oryza... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181793 ID=CN181793; Name=CN181793; organism=Citrus sinensis; type=EST; length=749bp
CTTTTTTTTCCGAATTGATGCGAATTTAATTTAGATAAAATAGATTGCAA
ATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCT
AAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAG
GACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACAT
GGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTC
TTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACAT
GGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCC
TTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAA
ATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATAT
CAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATT
CGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGC
CATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGA
GCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCA
GATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAATGAT
AGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTG
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