CN181793

Overview
NameCN181793
Unique NameCN181793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.889e-43
Identity = 95/165 (57.58%), Postives = 120/165 (72.73%), Query Frame = -2
Query:  254 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK 748
            RMVRELF MAR     I+F DEID+IG AR + G G+ D+EVQRTMLE+L QLDGF+A   IKVLMATNR DILD ALLRPGR+DRK+EF  P+ E R  I KIH+R M+  R I  + +A     ++GA++++VC EAGM+A+  RR  VT++DF  AV KV+K
Sbjct:  285 RMVRELFQMARSKKACILFFDEIDAIGGARFDDGVGS-DNEVQRTMLEILYQLDGFDARGNIKVLMATNRPDILDPALLRPGRLDRKVEFCLPDLEGRTQIFKIHTRTMSCERDIRFELLAGLCPNSTGADIRSVCIEAGMYAIGARRKSVTEKDFLDAVNKVVK 448          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.889e-43
Identity = 90/163 (55.21%), Postives = 118/163 (72.39%), Query Frame = -2
Query:  260 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 748
            R++RE+F  AR+H P IIFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+  +++K++MATNR D LD ALLRPGR+DRKI    PNE++RLDILKIH+  +     ID + I +  +G +GA+L  VCTEAGMFA+R     V QEDF  AV KV
Sbjct:  213 RLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRKV 374          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PSMR_METMJ (Proteasome-activating nucleotidase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=pan PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.496e-43
Identity = 86/163 (52.76%), Postives = 123/163 (75.46%), Query Frame = -2
Query:  260 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 748
            R+VRELF +A++ APSIIF+DEID+IG+ R +S + +GD EVQRT+++LL ++DGF+    +K++ ATNRIDILD+ALLRPGR DR IE P P+ + RL ILKIH++ MN+   ++L +++    G +GA+L+A+C EAGMFA+R  R  V  EDF  A+ K+
Sbjct:  233 RLVRELFDLAKQRAPSIIFIDEIDAIGAHRNDSTT-SGDREVQRTLMQLLAEMDGFDNRGDVKIVAATNRIDILDRALLRPGRFDRMIEIPLPDHQGRLAILKIHTQYMNIGEDVNLSEVSRLTEGKNGADLRAICMEAGMFAIRMERDAVNSEDFMKAIDKL 394          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.599e-42
Identity = 85/169 (50.30%), Postives = 125/169 (73.96%), Query Frame = -2
Query:  242 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 748
            ++VR+ F +A+E +P+IIF+DE+D+IG+ R +S    GD EVQRTMLELLNQLDGF + +++KV+ ATNR+D LD ALLR GR+DRK+EFP PNEE+R+ IL+IHSR+M +   I+ +++A   +  +GA LK+VC EAGM ALR+    +  E F   + +V  ++++
Sbjct:  265 KLVRDAFALAKEKSPAIIFIDELDAIGTKRFDSEKA-GDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDTLDPALLRSGRLDRKLEFPLPNEEARVGILRIHSRKMAIDDDINWEELARSTDEYNGAMLKSVCVEAGMIALRQGDTKINHEHFMDGILEVQMRKSK 432          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.089e-42
Identity = 84/162 (51.85%), Postives = 122/162 (75.31%), Query Frame = -2
Query:  263 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAK 748
            R+VRELF +A++ +PSIIF+DEID+IG++R ES + +GD EV RT+++LL ++DGF     ++++ ATNRIDILD+ALLRPGR DR IE P P+ E R+ IL IH   MN+ + +D++ IA + +G +GA+L+++C EAGMFA+R     VT EDFE ++ K
Sbjct:  233 RLVRELFELAKKKSPSIIFIDEIDAIGASRTESNT-SGDREVHRTLMQLLAEMDGFSNRGDVRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGADLRSICMEAGMFAIRSDHEMVTLEDFEQSIEK 393          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.936e-42
Identity = 80/163 (49.08%), Postives = 121/163 (74.23%), Query Frame = -2
Query:  260 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 748
            ++VR+LF +AR+H P+++F+DEID+I S R +S + +GD+EVQRTM++LL+++DGF+    I+++ ATNR D+LD+A+LRPGR DR IE P+PN   R  I +IH+R MN+   +D  ++A      SGA++KA+CTEAGMFA+R+ R  V  +DF+ A  K+
Sbjct:  229 KLVRDLFQVARDHEPAVVFIDEIDAIASKRTDSKT-SGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDRAILRPGRFDRLIEVPHPNVGGREKIFRIHTRAMNVADSVDFGELAADTGDLSGADVKAICTEAGMFAIRDDRTEVRMQDFQSAREKL 390          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 169.859 bits (429), Expect = 1.354e-41
Identity = 90/173 (52.02%), Postives = 122/173 (70.52%), Query Frame = -2
Query:  233 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV-MKKETEKNM 748
            ++VRE+F MAR+ APSIIF+DE+DSI + R+   +G  D EVQRT+++LL ++DGF+    I+++ ATNR D+LD A+LRPGR DR +  P P  E+R  ILKIH  +M L   ID KK+A+   G SGA+LKA+ TEAGMFA+R+ +  V  EDF  AV KV M  +T+K M
Sbjct:  239 KLVREIFEMARKKAPSIIFIDELDSIAARRLNETTG-ADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDFLEAVEKVSMAADTQKMM 410          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.309e-41
Identity = 89/173 (51.45%), Postives = 121/173 (69.94%), Query Frame = -2
Query:  233 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV-MKKETEKNM 748
            ++VRE+F MAR+ APSIIF+DE+DSI + R+   +G  D EVQRT+++LL ++DGF+    I+++ ATNR D+LD A+LRPGR DR +  P P  E+R  ILKIH  +M L   ID KK+A+   G SGA+LKA+ TEAGMFA+R  +  V  E+F  AV KV M  +T+K M
Sbjct:  239 KLVREIFEMARKKAPSIIFIDELDSIAARRLNETTG-ADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEFLEAVEKVSMAADTQKMM 410          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 2.309e-41
Identity = 87/178 (48.88%), Postives = 122/178 (68.54%), Query Frame = -2
Query:  218 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK-KETEKNMSLRKL 748
            R++RE+F  A+EH P +IFMDEID+IG  R   G+ + D E+QRT++ELLNQ+DGF+   + K++MATNR D LD ALLRPGR+DRKIE P PNE  R++ILKIH  +++    ID + + +  +G +GA+L+ V TEAG  A++E R +V Q D   A  KV   K+ E  +  +KL
Sbjct:  212 RIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGT-SADREIQRTLMELLNQMDGFDYLGQTKIIMATNRPDTLDPALLRPGRLDRKIEIPLPNEVGRMEILKIHLEKVSKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLKKLEGTIDYQKL 388          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 167.548 bits (423), Expect = 6.719e-41
Identity = 83/178 (46.63%), Postives = 120/178 (67.42%), Query Frame = -2
Query:  218 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMK-KETEKNMSLRKL 748
            R++RE+F  A+EH P IIFMDE+D+IG  R   G+ + D E+QRT++ELL Q+DGF+   + K++MATNR D LD ALLRPGR+DRK+E P PNE  RL+I KIH+ ++      D +   +  +G +GA+++   TEAG FA+R+ R H+  +D   AV KV + K+ E  +  +KL
Sbjct:  261 RIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGT-SADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVKKLEGTIEYQKL 437          
The following BLAST results are available for this feature:
BLAST of CN181793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 367
Match NameE-valueIdentityDescription
PRS7B_ARATH1.889e-4357.5826S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS10_BOVIN1.889e-4355.2126S protease regulatory subunit S10B OS=Bos taurus... [more]
PSMR_METMJ5.496e-4352.76Proteasome-activating nucleotidase OS=Methanoculle... [more]
PRS6A_SCHPO1.599e-4250.3026S protease regulatory subunit 6A OS=Schizosaccha... [more]
PSMR_METPE2.089e-4251.85Proteasome-activating nucleotidase OS=Methanosphae... [more]
PSMR2_HALSA7.936e-4249.08Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PSMR_METAC1.354e-4152.02Proteasome-activating nucleotidase OS=Methanosarci... [more]
PSMR_METMA2.309e-4151.45Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS10_SCHPO2.309e-4148.88Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS10_YEAST6.719e-4146.6326S protease subunit RPT4 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181793 ID=CN181793; Name=CN181793; organism=Citrus sinensis; type=EST; length=749bp
CTTTTTTTTCCGAATTGATGCGAATTTAATTTAGATAAAATAGATTGCAA
ATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCT
AAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAG
GACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACAT
GGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTC
TTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACAT
GGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCC
TTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAA
ATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATAT
CAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATT
CGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGC
CATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGA
GCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCA
GATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAATGAT
AGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTG
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