CN181793

Overview
NameCN181793
Unique NameCN181793
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.955e-40
Identity = 83/171 (48.54%), Postives = 122/171 (71.35%), Query Frame = -2
Query:  236 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 748
            RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C E+GM A+RE R  V  +DFE A   V+KK+ +++
Sbjct:  245 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.955e-40
Identity = 83/171 (48.54%), Postives = 122/171 (71.35%), Query Frame = -2
Query:  236 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 748
            RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C E+GM A+RE R  V  +DFE A   V+KK+ +++
Sbjct:  245 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS6B_HUMAN (26S protease regulatory subunit 6B OS=Homo sapiens GN=PSMC4 PE=1 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.955e-40
Identity = 83/171 (48.54%), Postives = 122/171 (71.35%), Query Frame = -2
Query:  236 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 748
            RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C E+GM A+RE R  V  +DFE A   V+KK+ +++
Sbjct:  245 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS6B_BOVIN (26S protease regulatory subunit 6B OS=Bos taurus GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.955e-40
Identity = 83/171 (48.54%), Postives = 122/171 (71.35%), Query Frame = -2
Query:  236 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 748
            RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C E+GM A+RE R  V  +DFE A   V+KK+ +++
Sbjct:  245 RMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKKDEQEH 414          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.334e-40
Identity = 85/168 (50.60%), Postives = 118/168 (70.24%), Query Frame = -2
Query:  245 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 748
            RMVR++F +A+E++PSIIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ S  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  +      RMNL   +DL+    + +  SGA++ ++C EAGM A+RE R  V  +D E A   V+KK+T
Sbjct:  241 RMVRDVFRLAKENSPSIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQSTNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTVCSRMNLSDDVDLEDWVARPDKISGADINSICQEAGMQAVRENRYVVLTKDLEKAYKNVVKKDT 407          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PSMR_AERPE (Proteasome-activating nucleotidase OS=Aeropyrum pernix GN=pan PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.702e-40
Identity = 86/163 (52.76%), Postives = 118/163 (72.39%), Query Frame = -2
Query:  260 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV 748
            R+VRE+F +ARE APSI+F+DEID+I S R++ G+ +GD EVQRTML+LL +LDGF+  + +KV+ ATNR+D++D A+LRPGR DR IE P P+   RL+IL IH+R+  +   +DL+ IA+   G SGA+LKAV  EAG  A+R     +T +D   AV KV
Sbjct:  219 RLVREIFRLAREKAPSILFIDEIDAIASKRVDIGT-SGDREVQRTMLQLLAELDGFDPLDNVKVIAATNRLDLIDPAVLRPGRFDRIIEVPLPSLRGRLEILGIHTRKAKMAPDVDLEAIAKLTEGFSGADLKAVVVEAGYNAIRRGSRVITMDDMIKAVEKV 380          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.702e-40
Identity = 82/167 (49.10%), Postives = 118/167 (70.66%), Query Frame = -2
Query:  248 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 748
            RMVR++F +A+E++P+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL++   + +  SGA++ A+C EAGM A+RE R  V  +DFE      +KK+
Sbjct:  242 RMVRDVFRLAKENSPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITAKMNLSEEVDLEEFVARPDRVSGADINAICQEAGMNAVRENRYIVLPKDFEKGYKNNIKKD 407          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 9.702e-40
Identity = 81/170 (47.65%), Postives = 121/170 (71.18%), Query Frame = -2
Query:  239 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEK 748
            R+VR++F +ARE++P+IIF+DEID+I + R ++ +G  D EVQR ++ELLNQ+DGF+ S  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I ++ + +MNL   +DL+    + +  SGAE++++C EAGM A+R+ R  +  +DFE      +KK T +
Sbjct:  230 RLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTG-ADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKASIKKNTHE 398          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS6B_ARATH (26S protease regulatory subunit 6B homolog OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 6.288e-39
Identity = 81/170 (47.65%), Postives = 121/170 (71.18%), Query Frame = -2
Query:  242 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAV-AKVMKKETE 748
            RMVR++F +A+E+AP+IIF+DE+D+I +AR ++ +G  D EVQR ++ELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  + ++ + +MNL   +DL+    + +  S AE+ A+C EAGM A+R+ R  +  +DFE    A V K +T+
Sbjct:  235 RMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTSKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEKGYRANVKKPDTD 403          
BLAST of CN181793 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.213e-39
Identity = 79/166 (47.59%), Postives = 118/166 (71.08%), Query Frame = -2
Query:  251 RMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 748
            RMVR++F +ARE APSI+F+DE+DSI + R ++ S + D EVQR ++ELLNQ+DGF+ +  +KV+MATNR D +D ALLRPGR+DRKIEFP P+   +  +    + +M+L   +D++ +  +    S A++ ++C EAGM A+R  R  VTQ DFE A +KV+++
Sbjct:  214 RMVRDVFRLAREKAPSIVFIDEVDSIATKRFDA-STSADREVQRVLIELLNQMDGFDPAANVKVIMATNRADTIDPALLRPGRLDRKIEFPLPDRRQKRLVFNAITSKMSLNDSVDIESLVCRPEKISCADINSICQEAGMLAVRASRYMVTQRDFEEAYSKVVER 378          
The following BLAST results are available for this feature:
BLAST of CN181793 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 367
Match NameE-valueIdentityDescription
PRS6B_RAT1.955e-4048.5426S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA1.955e-4048.5426S protease regulatory subunit 6B OS=Macaca fasci... [more]
PRS6B_HUMAN1.955e-4048.5426S protease regulatory subunit 6B OS=Homo sapiens... [more]
PRS6B_BOVIN1.955e-4048.5426S protease regulatory subunit 6B OS=Bos taurus G... [more]
PRS6B_CAEEL3.334e-4050.60Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PSMR_AERPE9.702e-4052.76Proteasome-activating nucleotidase OS=Aeropyrum pe... [more]
PRS6B_MANSE9.702e-4049.1026S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS6B_DICDI9.702e-4047.6526S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6B_ARATH6.288e-3947.6526S protease regulatory subunit 6B homolog OS=Arab... [more]
PRS6B_ENCCU8.213e-3947.5926S protease regulatory subunit 6B homolog OS=Ence... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181793 ID=CN181793; Name=CN181793; organism=Citrus sinensis; type=EST; length=749bp
CTTTTTTTTCCGAATTGATGCGAATTTAATTTAGATAAAATAGATTGCAA
ATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACAACAGTCAGGCT
AAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGTTAAG
GACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGCACAT
GGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTGTTTC
TTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTTACAT
GGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACACAGCC
TTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCTTCAA
ATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGGATAT
CAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTCAATT
CGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTGTCGC
CATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGGTTGA
GCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCTGCCA
GATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAATGAT
AGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATTCTG
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