CN181789

Overview
NameCN181789
Unique NameCN181789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length552
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig821 contig Csv1_Contig821:147..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_MYTCA (Histone H4 OS=Mytilus californianus PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_MYRRU (Histone H4 OS=Myrmica ruginodis GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_MOUSE (Histone H4 OS=Mus musculus GN=Hist1h4a PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_MASBA (Histone H4 OS=Mastigamoeba balamuthi PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRD+VTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   27 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLY 104
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_MACFA (Histone H4 OS=Macaca fascicularis GN=QtsA-19327 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_HUMAN (Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_DROYA (Histone H4 OS=Drosophila yakuba GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_DROTE (Histone H4 OS=Drosophila teissieri GN=His4 PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_DROSI (Histone H4 OS=Drosophila simulans GN=His4 PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CN181789 vs. ExPASy Swiss-Prot
Match: H4_DROSE (Histone H4 OS=Drosophila sechellia GN=His4 PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.098e-36
Identity = 76/78 (97.44%), Postives = 78/78 (100.00%), Query Frame = -2 
Query:  192 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 425
            VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDAVTYTEHA+RKTVTAMDVVYALKRQGRTLY
Sbjct:   22 VLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CN181789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_MYTCA2.098e-3697.44Histone H4 OS=Mytilus californianus PE=3 SV=3[more]
H4_MYRRU2.098e-3697.44Histone H4 OS=Myrmica ruginodis GN=His4 PE=3 SV=2[more]
H4_MOUSE2.098e-3697.44Histone H4 OS=Mus musculus GN=Hist1h4a PE=1 SV=2[more]
H4_MASBA2.098e-3697.44Histone H4 OS=Mastigamoeba balamuthi PE=3 SV=3[more]
H4_MACFA2.098e-3697.44Histone H4 OS=Macaca fascicularis GN=QtsA-19327 PE... [more]
H4_HUMAN2.098e-3697.44Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2[more]
H4_DROYA2.098e-3697.44Histone H4 OS=Drosophila yakuba GN=His4 PE=3 SV=2[more]
H4_DROTE2.098e-3697.44Histone H4 OS=Drosophila teissieri GN=His4 PE=3 SV... [more]
H4_DROSI2.098e-3697.44Histone H4 OS=Drosophila simulans GN=His4 PE=3 SV=... [more]
H4_DROSE2.098e-3697.44Histone H4 OS=Drosophila sechellia GN=His4 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H17_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181789 ID=CN181789; Name=CN181789; organism=Citrus sinensis; type=EST; length=552bp
TTTTTTTTTTTTTTTTTCAAGAAAACAGTTCTATATTGCCTTCAATATAA
AGATAAGATTTAACTTGATAGAATTACAAAGCAGCAACCTAATAACAAAC
TACTAAGAGCCCCATCTACCAGATCAAGATCTAGAGTCAAGATCTATTAA
CATTTAATTCCAGAACCCTAAGACAATTAACCCCCAAATCCATAAAGAGT
CCTGCCCTGCCTCTTGAGAGCGTAAACGACGTCCATCGCGGTCACGGTCT
TTCTCCTGGCGTGCTCAGTGTAGGTCACGGCGTCACGGATGACGTTCTCC
AAGAATATCTTCAGGACGCCACGTGTCTCCTCGTAGATCAAGCCGCTGAT
ACGCTTGACTCCACCTCTACGAGCCAAACGCCGGATTGCCGGCTTTGTGA
TACCCTGAATGTTATCGCGAAGCACCTTACGGTGACGCTTGGCGCCTCCC
TTTCCCAATCCCTTGCCTCCCTTACCGCGCCCAGACATTTTAGCGAGGAA
CTTAAAAGACTTTCCGCTGTTCCTCGAAAGAGAATTTGGATAGAGAAATT
TG
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