CN181788

Overview
NameCN181788
Unique NameCN181788
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2282 contig Csv1_Contig2282:1..651. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181788 vs. ExPASy Swiss-Prot
Match: GHDC_MOUSE (GH3 domain-containing protein OS=Mus musculus GN=Ghdc PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.422e-11
Identity = 52/197 (26.40%), Postives = 85/197 (43.15%), Query Frame = 1 
Query:   64 LAHVQVGKQYELVVTTYAGLNRYRIGDILLVTGYYNSAPQFRFVKRKNVLLSIDSDKTDEAELQKGIDNASLL---LKEFNASVIEYTSYADTTTIPGHYVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMD-YAISRGASINQYKAPRCVSFTPILELLNGKVVS 642
            L   Q  K+YELV+T +  L R R+GD++ V G YN  P  RF  R    L++  + TDE      +  A       K  +   +E            HY +F EL      +  + + L+ C         S+  +G     S+GP ++ +V+ G+F  L +  A    +S    + PR +    + +LL  +V+S
Sbjct:  341 LTDAQREKEYELVLTNHTSLTRCRLGDVVQVVGTYNQCPVVRFTCRLGQTLNVRGEVTDETVFSVALAQAVGQWPGAKLLDHVCVESRVLDSCEGSAPHYEVFVELRGLRNLSEENRDKLDNCLQEASAQYKSLRFRG-----SVGPAKVHLVRPGSFRVLREALAAFSSSSCRPPEMPRVIRLRHLAQLLQKRVIS 532
The following BLAST results are available for this feature:
BLAST of CN181788 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GHDC_MOUSE7.422e-1126.40GH3 domain-containing protein OS=Mus musculus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181788 ID=CN181788; Name=CN181788; organism=Citrus sinensis; type=EST; length=651bp
GTCTTGCCTCACGACCCAAATTATCCTCCTCTCTCTCCTGAATCACCTCC
ACGCCTTGTTGATCTCGCCCACGTCCAAGTTGGCAAACAGTATGAGCTTG
TGGTCACAACCTACGCTGGCCTGAACCGTTACCGAATTGGTGACATCCTC
CTTGTCACCGGATACTACAACTCGGCTCCCCAATTTCGTTTTGTCAAAAG
AAAGAATGTTTTGTTGAGCATTGACTCAGACAAAACCGACGAGGCTGAAC
TGCAAAAGGGCATTGATAATGCTTCCTTGCTGTTGAAGGAATTCAACGCC
AGCGTCATTGAGTACACAAGTTATGCTGACACAACGACAATTCCAGGACA
TTATGTGATATTCTGGGAGTTGCTTGTTAAAGATGCAGCCAATTCACCAA
GTGATGAGGTGCTGAATCAATGTTGCCTGGTAGTGGAAGAGTCGCTGAAC
TCGGTGTATCGACAAGGCCGAGTTGCTGATAATTCAATTGGACCACTAGA
GATAAGGGTGGTGAAAAATGGGACATTTGAGGAGCTAATGGACTATGCCA
TTTCAAGGGGCGCGTCAATTAATCAGTACAAAGCGCCAAGGTGTGTTAGT
TTCACTCCCATTCTGGAACTGCTTAATGGTAAGGTGGTCTCAAAAGCATT
T
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