CN181787

Overview
NameCN181787
Unique NameCN181787
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH34_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.982e-33
Identity = 68/107 (63.55%), Postives = 78/107 (72.90%), Query Frame = -2
Query:  387 YVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHW 707
            YV+FWEL            V   CCL VEE LNSVYRQ R AD SIGPLEIRVV +GTF++LMDYA+SRGASINQYKAPRCV   P++ELL+GRV + +FSP  P W
Sbjct:  496 YVLFWELRSPAGGTPVPASVFEDCCLAVEEGLNSVYRQCRAADRSIGPLEIRVVADGTFDKLMDYALSRGASINQYKAPRCVRPGPVVELLDGRVQATYFSPKCPKW 602          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH317_ARATH (Indole-3-acetic acid-amido synthetase GH3.17 OS=Arabidopsis thaliana GN=GH3.17 PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.105e-25
Identity = 55/111 (49.55%), Postives = 74/111 (66.67%), Query Frame = -2
Query:  381 YVIFWELLVKDAANSPS--DEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVP 707
            YV+FWEL  + + + P   D+ +  CC  VE+ L+ VYR+ R  D SIGPLEIRVV  GTF+ LMD+ +S+G+S+NQYK PRCV     LE+L+ RV+ + FS   P W P
Sbjct:  494 YVLFWELKPRHSNDPPKLDDKTMEDCCSEVEDCLDYVYRRCRNRDKSIGPLEIRVVSLGTFDSLMDFCVSQGSSLNQYKTPRCVKSGGALEILDSRVIGRFFSKRVPQWEP 604          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH39_ARATH (Putative indole-3-acetic acid-amido synthetase GH3.9 OS=Arabidopsis thaliana GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 57/110 (51.82%), Postives = 73/110 (66.36%), Query Frame = -2
Query:  381 YVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCV-SFTPILELLNGRVVSKHFSPAAPHWVP 707
            YV+FWE+           +++ +CC+ VEE L+ +YRQ R  + SIG LEIRVVK GTFE+LMD  IS+G S NQYK PRCV S +   +LLNG V++  FSP  P WVP
Sbjct:  481 YVLFWEI-----QGHLEPKLMEECCVAVEEELDYIYRQCRTKERSIGALEIRVVKPGTFEKLMDLIISQGGSFNQYKTPRCVKSNSATFKLLNGHVMASFFSPRDPTWVP 585          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH311_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.11 OS=Oryza sativa subsp. japonica GN=GH3.11 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 55/107 (51.40%), Postives = 73/107 (68.22%), Query Frame = -2
Query:  393 YVIFWELL-VKDAANSPSD-EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAP 707
            YV+FWE+    D   +P D ++L  CC  VEESL+ VYR+ R  D SIGPLEIR+V+ G F+ LMD  +S G+SINQYK PRC+  +  L+LLN +V++  FSP  P
Sbjct:  481 YVLFWEIKSTHDERPAPLDAQLLESCCAAVEESLDYVYRRCRAHDRSIGPLEIRLVEAGAFDALMDLLVSHGSSINQYKTPRCIESSLALKLLNSKVIACFFSPQDP 587          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH37_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.7 OS=Oryza sativa subsp. japonica GN=GH3.7 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.184e-14
Identity = 42/108 (38.89%), Postives = 62/108 (57.41%), Query Frame = -2
Query:  393 YVIFWELLVKDAANSPSD---EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAP 707
            Y++FWEL     +N   D     + +CCL VE+  + +YR+ R    SI  LEIR++ +G F+ LMD+ +SRG S +QYK P  +     + +L  RVV + FS A P
Sbjct:  504 YILFWELTNTCDSNVAIDIDQTAMEKCCLAVEDHFDEMYRKIRHR-GSISALEIRILSHGAFDALMDFFVSRGTSASQYKTPTAIRSKEAMMVLEERVVGRFFSQATP 610          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH35_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.5 OS=Oryza sativa subsp. japonica GN=GH3.5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.025e-13
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = -2
Query:  399 YVIFWELLVKDAANSPSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCV--SFTPILELLNGRVVSKHFSPA 707
            YVIFWEL     +   SDEVL+ C   ++ +       G     +IGPLE+R+++ GTF+E++D+ +S G +++Q+K PR V  S + +L++L+  V   +FS A
Sbjct:  479 YVIFWEL-----SGDASDEVLSSCANALDLAFIDAGYTGSRKIKTIGPLELRILRKGTFKEILDHFLSLGGAVSQFKTPRFVNPSNSKVLQILSRNVTQSYFSTA 578          
BLAST of CN181787 vs. ExPASy Swiss-Prot
Match: GH32_ARATH (Indole-3-acetic acid-amido synthetase GH3.2 OS=Arabidopsis thaliana GN=GH3.2 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 34/50 (68.00%), Postives = 42/50 (84.00%), Query Frame = -2
Query:  561 YVIFWELLVKDAANS-PSDEVLNQCCLVVEESLNSVYRQGRVADNSIGPL 707
            YVI+WELL +D +N+  S+EV+ +CCL +EESLNSVYRQ RVAD SIGPL
Sbjct:  490 YVIYWELLGRDQSNALMSEEVMAKCCLEMEESLNSVYRQSRVADKSIGPL 539          
The following BLAST results are available for this feature:
BLAST of CN181787 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GH34_ORYSJ7.982e-3363.55Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH317_ARATH2.105e-2549.55Indole-3-acetic acid-amido synthetase GH3.17 OS=Ar... [more]
GH39_ARATH2.328e-2451.82Putative indole-3-acetic acid-amido synthetase GH3... [more]
GH311_ORYSJ2.574e-2351.40Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH37_ORYSJ2.184e-1438.89Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH35_ORYSJ7.025e-1337.14Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH32_ARATH1.325e-1168.00Indole-3-acetic acid-amido synthetase GH3.2 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181787 ID=CN181787; Name=CN181787; organism=Citrus sinensis; type=EST; length=708bp
CATGGCAAGCACTTCCAACGCCTTTTCCTCAACTTTCAGAAAGCTGAAAG
AAAATTAAAAGAGACACGACGACGACAACGACATGCCATCGACATTCCAT
AGACACTTACATCACGCGCACAGGGAGATTATGTGAACTTATTGCACAAA
CACACACTACCATCAAATTTCAAAAGAAGCTAAAAGACGCTTTTAAAAGT
TCAATTAACAACAAAGAGATGACATAGAGAGAGAGGCTGCTCTGAATCTG
ATCTCGGTCTCCTCAAGCTACTAGCTGGACCTTTTTGGTTGGAACCCCTG
GAAAATTTCTCTAGAAATTTCTTTATTCTATAGTGCCATACATGACGCTC
GTCATGGTGCAGTCCTCAACGTCGTCGTTCTGGGACCCAGTGAGGAGCAG
CTGGGCTAAAATGCTTTGAGACCACCCTACCATTAAGCAGTTCCAGAATG
GGAGTGAAACTAACACACCTTGGCGCTTTGTACTGATTAATTGACGCGCC
CCTTGAAATGGCATAGTCCATTAGCTCCTCAAATGTCCCATTTTTCACCA
CCCTTATCTCTAGTGGTCCAATTGAATTATCAGCAACTCGGCCTTGTCGA
TACACCGAGTTCAGCGACTCTTCCACTACCAGGCAACATTGATTCAGCAC
CTCATCACTTGGTGAATTGGCTGCATCTTTAACAAGCAACTCCCAGAATA
TCACATAA
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