CN181782

Overview
NameCN181782
Unique NameCN181782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2495 contig Csv1_Contig2495:6..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADB_AERHH (Fatty acid oxidation complex subunit alpha OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=fadB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 45/192 (23.44%), Postives = 80/192 (41.67%), Query Frame = 2
Query:   89 LYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAE 664
            L  + P   N L R       +A+++L Q   +  ++L+   D F  G D+     + D   +   G   +          D  +AIE    P +++I G  +GGG + + + D R     A   + E  L I    G   RLP ++G  NA+E   TG+ +   +A ++G +  V          V+++ +
Sbjct:   20 LRFDAPGSVNKLDRATLLSLSEAIAALQQERELKGLILTSGKDAFIVGADITEFLELFDLPQADLLGWLKKA--------NDIFSAIEDLPVPTLSAIKGHALGGGCETILSTDFRLADTSAKIGLPETKLGIMPGFGGTVRLPRVIGADNALEWITTGKDYRADDALKVGAIDAVVAPDALQSAAVQMIKD 203          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECHP_HUMAN (Peroxisomal bifunctional enzyme OS=Homo sapiens GN=EHHADH PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 45/167 (26.95%), Postives = 73/167 (43.71%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 616
            NA+S     +  + L     +  + AIV+ G    F +G D++  S+      +                L   V  I+R  KPV+A+I G   GGG+++   C  R    +A   + EV L +       Q LP + G   A++L  +GRR    EA +LG++ +V
Sbjct:   22 NAISTTLLRDIKEGLQKAVIDHTIKAIVICGAEGKFSAGADIRGFSAPRTFGLT----------------LGHVVDEIQRNEKPVVAAIQGMAFGGGLELALGCHYRIAHAEAQVGLPEVTLGLLPGARGTQLLPRLTGVPAALDLITSGRRILADEALKLGILDKV 172          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: MENB_HAEIN (Naphthoate synthase OS=Haemophilus influenzae GN=menB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 55/197 (27.92%), Postives = 84/197 (42.64%), Query Frame = 2
Query:   32 ESYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDH-FCSGIDLKTLSSVTDHTTSTDRGRFSE-KFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 616
            E Y  I+    T    +  + +NRP  RNA   +   E   A S    + N+  IVL+G G+  FCSG D K       +   +     +   F+RDIR           C KPV+A + G  IGGG  +   CD+   +++A F      +           +  +VG   A E+    R++   EA ++GLV+ V
Sbjct:   20 EGYSDIRYHKSTDG--IAKITINRPEVRNAFRPQTVKEMMTAFSDARFDENIGVIVLTGEGEKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRDIR----------SCPKPVVAMVAGYAIGGGHVLHMLCDLTIAAENAIFGQTGPKVGSFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGLVNTV 204          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: HIBCH_XENTR (3-hydroxyisobutyryl-CoA hydrolase, mitochondrial OS=Xenopus tropicalis GN=hibch PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.828e-11
Identity = 52/176 (29.55%), Postives = 87/176 (49.43%), Query Frame = 2
Query:   95 LNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDH-FCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLG---TLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVS 610
            LNRP   NAL+          L   +++P    +++ G G   FC+G D++   +VTD   + DR   ++ F R+   L +A+      +KP +A I G  +GGGV +      R  S++  F++ E  + +  D+G    L RLP  +G    + LALTG R  G + ++ G+ +
Sbjct:   50 LNRPKALNALNLGMIRLIYPQLGLWEEDPETYLVIIKGVGGKAFCAGGDIR---AVTDAGKAGDR--LAQDFFREEYILNNAIGTY---KKPYVALIDGITMGGGVGLSVHGHFRVASENTLFAMPETAIGLFPDVGGGYFLPRLPGKLG----LYLALTGFRLKGSDVQKAGIAT 213          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: MENB_STAES (Naphthoate synthase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=menB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 62/190 (32.63%), Postives = 84/190 (44.21%), Query Frame = 2
Query:   95 LNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDH-FCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQ--DAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDL-AITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVK 652
            +NRP  RNA + +   E   A S    + NV+ IVL+G GD  FCSG D K             RG        DI  L   D    I    KPVIA + G  IGGG  +   CD+   + +A F      + +  A  G+   L  IVG+  A E+    R++   EA ++GLV+ V       D+ VK
Sbjct:   27 INRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDKAFCSGGDQK------------KRGHGGYVGEDDIPRLNVLDLQRLIRVIPKPVIAMVRGYAIGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGS-GYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEQVEDETVK 203          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: MENB_STAEQ (Naphthoate synthase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=menB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 62/190 (32.63%), Postives = 84/190 (44.21%), Query Frame = 2
Query:   95 LNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDH-FCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQ--DAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDL-AITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVK 652
            +NRP  RNA + +   E   A S    + NV+ IVL+G GD  FCSG D K             RG        DI  L   D    I    KPVIA + G  IGGG  +   CD+   + +A F      + +  A  G+   L  IVG+  A E+    R++   EA ++GLV+ V       D+ VK
Sbjct:   27 INRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDKAFCSGGDQK------------KRGHGGYVGEDDIPRLNVLDLQRLIRVIPKPVIAMVRGYAIGGGNVLNVVCDLTIAADNAIFGQTGPKVGSFDAGYGS-GYLARIVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEQVEDETVK 203          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADB_VIBSL (Fatty acid oxidation complex subunit alpha OS=Vibrio splendidus (strain LGP32) GN=fadB PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 47/208 (22.60%), Postives = 85/208 (40.87%), Query Frame = 2
Query:   38 YKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVA 661
            Y++  ++ K     +  L    P+  N L         KAL +L+ +  +  ++L+   D F  G D+     +          +   +    +RF     + +E    P ++ + G  +GGG + V A D R   K     + E  L I    G   RLP ++G  +AME+   G+     EA ++GL+  +  T   L+  +  V+
Sbjct:    3 YQANTLQVKELQDGIAELSFCAPASVNKLDLATLESLDKALDALNAHAGLRGLILTSNKDAFIVGADITEFLGLF--------AKPEAELDEWLRFANSIFSKLEDLPVPTLSMMRGHALGGGCECVLATDFRIGDKTTSIGLPETKLGIMPGFGGCVRLPRVIGADSAMEIITQGKACRADEALKVGLLDAIVETDQLLESAINTVS 202          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECHH_RHOCA (Probable enoyl-CoA hydratase OS=Rhodobacter capsulatus GN=fadB1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 54/191 (28.27%), Postives = 85/191 (44.50%), Query Frame = 2
Query:   35 SYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLV 607
            SY +I+ E    +  +  + L+RP   NAL+     E   AL          AIVL+G+G  FCSG DL   ++   +  +  R  +           +  + AI  C  PV+A+++GA  G G ++  A D+   ++ A F      + +  D G    LP  VG   AM +AL   +    EA  +GL+
Sbjct:    2 SYHTIRYE---ISEGLAVITLDRPEVMNALNAAMRHELTAALHRA--RGEARAIVLTGSGRAFCSGQDLGDGAAEGLNLETVLREEY-----------EPLLQAIYSCPLPVLAAVNGAAAGAGANLALAADVVIAAQSAAFMQAFTRIGLMPDAGGTWWLPRQVGMARAMGMALFAEKIGAEEAARMGLI 176          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: PKSI_BACSU (Putative polyketide biosynthesis enoyl-CoA isomerase pksI OS=Bacillus subtilis GN=pksI PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 50/198 (25.25%), Postives = 91/198 (45.96%), Query Frame = 2
Query:   74 SRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTS-TDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAE 664
            S +I + +   + +NA S+E   +  +A   + QNP   A++L+G  ++F SG   + L  +    T  TD   +S               A++ C  PVIA++ G  IGGG  +    DI   S+++ ++   +    T  +G    +P  +G+  A E+ L    + G + ++ G+  +V   +  LD  V+L  E
Sbjct:   13 SAIIQVKMQDRTHKNAFSQELTDDLIQAFEYIRQNPKYKAVILTGYDNYFASGGTQEGLLRIQQGLTKFTDDNLYS--------------LALD-CEIPVIAAMQGHGIGGGFVMGLFADIVILSRESVYTANFMKYGFTPGMGATFIVPKKLGFSLAQEILLNAGSYRGADLEKRGVPFKVLPRAEVLDYAVELAQE 195          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: CDY1_HUMAN (Testis-specific chromodomain protein Y 1 OS=Homo sapiens GN=CDY1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 47/197 (23.86%), Postives = 93/197 (47.21%), Query Frame = 2
Query:   35 SYKSIKIEGKTPNSRVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGT 625
            +Y+ I ++ +   ++++     R +++NAL+ E   E   AL+S   + +   ++ S  G  FC G+D         +  +T      +        +++ V    + +KP++ S++G  IG G  I+  CD+ + ++ A+F         + D  +    P ++G  +A E+ + GR+    EA   GLVS+VF T
Sbjct:  282 TYRDIVVKKEDGFTQIVLS--TRSTEKNALNTEVIKEIVNALNSAAADDS-KLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDT-------IKNFVNTFIQFKKPIVVSVNGPAIGLGASILPLCDLVWANEKAWFQTPYTTFGQSPDGCSSITFPKMMGKASANEMLIAGRKLTAREACAKGLVSQVFLT 468          
The following BLAST results are available for this feature:
BLAST of CN181782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
FADB_AERHH3.697e-1123.44Fatty acid oxidation complex subunit alpha OS=Aero... [more]
ECHP_HUMAN3.697e-1126.95Peroxisomal bifunctional enzyme OS=Homo sapiens GN... [more]
MENB_HAEIN4.828e-1127.92Naphthoate synthase OS=Haemophilus influenzae GN=m... [more]
HIBCH_XENTR4.828e-1129.553-hydroxyisobutyryl-CoA hydrolase, mitochondrial O... [more]
MENB_STAES6.305e-1132.63Naphthoate synthase OS=Staphylococcus epidermidis ... [more]
MENB_STAEQ6.305e-1132.63Naphthoate synthase OS=Staphylococcus epidermidis ... [more]
FADB_VIBSL6.305e-1122.60Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
ECHH_RHOCA6.305e-1128.27Probable enoyl-CoA hydratase OS=Rhodobacter capsul... [more]
PKSI_BACSU8.235e-1125.25Putative polyketide biosynthesis enoyl-CoA isomera... [more]
CDY1_HUMAN8.235e-1123.86Testis-specific chromodomain protein Y 1 OS=Homo s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181782 ID=CN181782; Name=CN181782; organism=Citrus sinensis; type=EST; length=693bp
GGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATCGATAA
AAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATCTTAAC
CGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAATTCCC
TAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCATCGTCC
TCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAACACTA
AGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTCTCCGA
GAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGCCATCG
AGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTATCGGA
GGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCAAAAGA
TGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGATCTCG
GGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGATGGAA
TTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAGTTGGG
TCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGGTGTCA
AGCTTGTTGCCGAGGGAAATTGCTGAAAAATCTCCTCTTGCCG
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