CN181782

Overview
NameCN181782
Unique NameCN181782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2495 contig Csv1_Contig2495:6..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECHA_RAT (Trifunctional enzyme subunit alpha, mitochondrial OS=Rattus norvegicus GN=Hadha PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.401e-18
Identity = 63/209 (30.14%), Postives = 110/209 (52.63%), Query Frame = 2
Query:    2 AFFTSAKQMEESYKSIKIEGKTPNSRVIYLYLNRPSQR-NALSREFFTEFPKALSSLDQNPNV-NAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 616
            +F TS+  +  ++ +  ++G      V  + +N P+ + N L++E  +EF + ++ +  N  + +A+++S     F +G D+  L+S T   T  +  R S++        Q     +E+  KPV+A+I G+C+GGG+++  AC  R  +KD      V EV L I    G  QRLP +VG   A ++ LTGR      AK++GLV ++
Sbjct:   28 SFTTSSALLSRTHINYGVKGD-----VAVIRINSPNSKVNTLNKEVQSEFVEVMNEIWANDQIRSAVLISSKPGCFVAGADINMLASCT---TPQEAARISQEG-------QKMFEKLEKSPKPVVAAISGSCLGGGLELAIACQYRIATKDRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQL 221          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SHEPC (Fatty acid oxidation complex subunit alpha OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadJ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 59/187 (31.55%), Postives = 95/187 (50.80%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  +F  E  + L+ +  +P++  +VL SG  D F +G D+  L +     T+ D    S++              +E  + PV+A+IHGAC+GGG+++  AC  R CS D      V EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV+ V   +  L   V++   G
Sbjct:   27 NTLKAQFGPEISEILAEIKSDPHIRGLVLISGKKDSFVAGADISMLDACK---TAGDAKALSQQGHV-------VFNELEALKIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAG 203          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_ENT38 (Fatty acid oxidation complex subunit alpha OS=Enterobacter sp. (strain 638) GN=fadJ PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 57/183 (31.15%), Postives = 90/183 (49.18%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDA--FFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF  +    L  +  N N+  ++ +S   D+F +G D+  ++       + +  R  ++   +I  L            PVIA+IHGAC+GGG+++  AC  R C+ DA     + EV L +    G  QRLP +VG   A+E+ LTG++    +A ++GLV  V   S  L   V+L
Sbjct:   29 NTLKAEFGVQVRSILKQVRDNKNIRGLIFISAKSDNFIAGADINMIARAKSAQEAEELARQGQQIMAEIHGLSI----------PVIAAIHGACLGGGLELALACHSRVCTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALEMILTGKQLRPRQALKVGLVDEVVPHSILLTAAVEL 201          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_PHOLL (Fatty acid oxidation complex subunit alpha OS=Photorhabdus luminescens subsp. laumondii GN=fadJ PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.391e-18
Identity = 61/195 (31.28%), Postives = 95/195 (48.72%), Query Frame = 2
Query:   95 LNRPSQR-NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            +N P ++ N L  EF  +F        Q+  +  ++L SG  D F +G D+   S +    T  D    +EK        Q   + I     PV+A+IHGAC+GGG+++  AC  R CS+D      + EV L +    G  QRLP ++G  +A+++ LTG++    +A  LGLV         LD  ++ V +G
Sbjct:   36 INVPGEKVNTLKAEFVDQFLNVFKQAQQSSGLKGLILISGKPDTFIAGADI---SMIAGCKTKEDARDLAEKG-------QKLFSQIANYPLPVVAAIHGACLGGGLELALACHWRVCSQDDKTRLGLPEVQLGLLPGSGGTQRLPRLIGVSSALDIMLTGKQLRAKQALRLGLVDDAVPLDILLDIAIEKVKKG 220          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_CITK8 (Fatty acid oxidation complex subunit alpha OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=fadJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 56/187 (29.95%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDA--FFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF T+    L  + +N  +  +V +S   D+F +G D+  + +      +    R  ++   +I+ L            PV+A+IHGAC+GGG+++  AC  R C+ DA     + EV L +    G  QRLP +VG   A+++ LTG++    +A  +GLV  V   +  L+  V+L  +G
Sbjct:   29 NTLKAEFATQVRAILKQIRENKALRGVVFISAKPDNFIAGADINMIGNCKSAQEAETLARQGQQIMAEIQALS----------VPVVAAIHGACLGGGLEMALACHRRICTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRPKQALRVGLVDEVVPHAILLEAAVELAIKG 205          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SHESR (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-7) GN=fadJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 60/187 (32.09%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF  E  + LS + ++ ++  +VL SG  D F +G D+  L +     T+ D    S++              +E    PV+A+IHGAC+GGG+++  AC  R CS D      V EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV+ V   +  L   V++   G
Sbjct:   27 NTLKAEFGPEISEILSEIKRDSSIRGLVLISGKKDSFVAGADISMLDACQ---TAGDAKALSQQGHV-------VFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAG 203          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SHESM (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain MR-4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 60/187 (32.09%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF  E  + LS + ++ ++  +VL SG  D F +G D+  L +     T+ D    S++              +E    PV+A+IHGAC+GGG+++  AC  R CS D      V EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV+ V   +  L   V++   G
Sbjct:   27 NTLKAEFGPEISEILSEIKRDSSIRGLVLISGKKDSFVAGADISMLDACQ---TAGDAKALSQQGHV-------VFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAG 203          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SHESA (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain ANA-3) GN=fadJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 60/187 (32.09%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF  E  + LS + ++ ++  +VL SG  D F +G D+  L +     T+ D    S++              +E    PV+A+IHGAC+GGG+++  AC  R CS D      V EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV+ V   +  L   V++   G
Sbjct:   27 NTLKAEFGPEISEILSEIKRDSSIRGLVLISGKKDSFVAGADISMLDACQ---TAGDAKALSQQGHV-------VFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAG 203          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SHEON (Fatty acid oxidation complex subunit alpha OS=Shewanella oneidensis GN=fadJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 60/187 (32.09%), Postives = 94/187 (50.27%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF  E  + LS + ++ ++  +VL SG  D F +G D+  L +     T+ D    S++              +E    PV+A+IHGAC+GGG+++  AC  R CS D      V EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV+ V   +  L   V++   G
Sbjct:   29 NTLKAEFGPEISEILSEIKRDSSIRGLVLISGKKDSFVAGADISMLDACQ---TAGDAKALSQQGHV-------VFNELEALNIPVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAG 205          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_PHOPR (Fatty acid oxidation complex subunit alpha OS=Photobacterium profundum GN=fadJ PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.078e-18
Identity = 61/200 (30.50%), Postives = 101/200 (50.50%), Query Frame = 2
Query:   80 VIYLYLNRPSQR-NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            V +L ++ P++R N L   F  +    L+ L    ++  +V+ SG  D+F +G D++ L++     T+ +  + + K        Q+    +E     V+A+IHG C+GGG+++  AC  R CS D      + EV L +    G  QRLP ++G  NA+++ LTG++    +AK LGLV      S  LD   K   +G
Sbjct:   23 VAWLKIDVPNERMNTLQSAFVDQVTDVLAQLKDKKDIKGMVVYSGKPDNFIAGADIRMLAACQ---TADEAQQLAAKG-------QELFGQLEALPFHVVAAIHGPCLGGGLELALACHSRVCSDDDKTRLGLPEVQLGLLPGSGGTQRLPRLIGVANALDMILTGKQLRAKKAKNLGLVEEAVPLSILLDIAEKQALKG 212          
The following BLAST results are available for this feature:
BLAST of CN181782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
ECHA_RAT1.401e-1830.14Trifunctional enzyme subunit alpha, mitochondrial ... [more]
FADJ_SHEPC1.830e-1831.55Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ENT381.830e-1831.15Fatty acid oxidation complex subunit alpha OS=Ente... [more]
FADJ_PHOLL2.391e-1831.28Fatty acid oxidation complex subunit alpha OS=Phot... [more]
FADJ_CITK83.122e-1829.95Fatty acid oxidation complex subunit alpha OS=Citr... [more]
FADJ_SHESR4.078e-1832.09Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHESM4.078e-1832.09Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHESA4.078e-1832.09Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHEON4.078e-1832.09Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_PHOPR4.078e-1830.50Fatty acid oxidation complex subunit alpha OS=Phot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181782 ID=CN181782; Name=CN181782; organism=Citrus sinensis; type=EST; length=693bp
GGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATCGATAA
AAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATCTTAAC
CGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAATTCCC
TAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCATCGTCC
TCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAACACTA
AGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTCTCCGA
GAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGCCATCG
AGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTATCGGA
GGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCAAAAGA
TGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGATCTCG
GGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGATGGAA
TTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAGTTGGG
TCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGGTGTCA
AGCTTGTTGCCGAGGGAAATTGCTGAAAAATCTCCTCTTGCCG
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