CN181782

Overview
NameCN181782
Unique NameCN181782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2495 contig Csv1_Contig2495:6..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_ECO45 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 55/186 (29.57%), Postives = 91/186 (48.92%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAE 664
            N L  EF ++    +  + +N  +  +V +S   D+F +G D+  + +      +    R  ++   +I  L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V+L  +
Sbjct:   29 NTLKAEFASQVRAIIKQIRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPI----------PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEAAVELAKQ 204          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_ECO27 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.888e-17
Identity = 55/186 (29.57%), Postives = 91/186 (48.92%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAE 664
            N L  EF ++    +  + +N  +  +V +S   D+F +G D+  + +      +    R  ++   +I  L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V+L  +
Sbjct:   29 NTLKAEFASQVRAIIKQIRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPI----------PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEAAVELAKQ 204          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECHA_PIG (Trifunctional enzyme subunit alpha, mitochondrial OS=Sus scrofa GN=HADHA PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.690e-17
Identity = 56/183 (30.60%), Postives = 99/183 (54.10%), Query Frame = 2
Query:   80 VIYLYLNRPSQR-NALSREFFTEFPKALSSLDQNPNV-NAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 616
            V  + +N P+ + N L +E  +EF + ++ +  +  + +A+++S     F +G D+  LS+ T   TS +  + S++ +R    L       E+  KP++A+I+G C+GGG+++  +C  R  +KD        EV L I    G  QRLP +VG   A ++ LTGR     +AK++GLV ++
Sbjct:   49 VAVIRINSPNSKVNTLGQELHSEFIEVMNEVWSSSQIRSAVLISSKPGCFIAGADINMLSACT---TSQEVTQISQEAQRTFEKL-------EKSTKPIVAAINGTCLGGGLELAISCQYRIATKDKKTVLGAPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRGIRADKAKKMGLVDQL 221          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SHELP (Fatty acid oxidation complex subunit alpha OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 56/187 (29.95%), Postives = 93/187 (49.73%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFC--SKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF  E  + L+ +  +  +  +V+ SG  D F +G D+    S+ D   + +  R   K   ++ F      A+E    PV+A+I+GAC+GGG+++  AC  R C  S      + EV L +    G  QRLP +VG   ++++ LTG++    +A ++GLV  V   S  L   +++   G
Sbjct:   27 NTLRAEFGPEICEMLAEIKADAGIRGVVIISGKKDSFVAGADI----SMLDACATAEDARELSKQGHEVFF------ALESLSIPVVAAINGACLGGGLELALACHQRVCTDSNKTMLGLPEVQLGLLPGGGGTQRLPRLVGIAKSLDMMLTGKQLRAKQALKMGLVDDVVPESILLQTAIEMALAG 203          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_ERWCT (Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora subsp. atroseptica GN=fadJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.004e-16
Identity = 63/225 (28.00%), Postives = 102/225 (45.33%), Query Frame = 2
Query:    5 FFTSAKQMEESYKSIKIEGKTPNSRVIYLYLNRPSQR-NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            F  +A    E   +  +  +  N  VI + +  P +R N L  EF  +         Q+  +  ++ +S   D F +G D+  L+  +           +E+     +  Q+    I     PV+A+IHGAC+GGG+++  ACD R CS D      + EV L +    G  QRLP ++G  +A++L LTGR     +A   GLV         LD  V+++ +G
Sbjct:    7 FSVTASPTTEKTSAFSLTIRPDNIGVISIDV--PGERVNTLKSEFAEQILSVFELARQHATLRGLIFISAKPDSFIAGADITMLNKCSS----------AEQAENLAKQGQETFDQIAALPFPVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPGSGGTQRLPRLIGLDSALDLILTGRHLRAGQALRQGLVDEAVPHDILLDTAVEILKKG 219          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SHIBS (Fatty acid oxidation complex subunit alpha OS=Shigella boydii serotype 4 (strain Sb227) GN=fadJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF ++    +  L +N  +  +V +S   D+F +G D+  + +      +    R  ++   +I  L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G    +E+ LTG++    +A +LGLV  V   S  L+  V+L
Sbjct:   29 NTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTVQEAEALARQGQQLMAEIHALPI----------PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTTLEMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVEL 201          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SALTI (Fatty acid oxidation complex subunit alpha OS=Salmonella typhi GN=fadJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 54/183 (29.51%), Postives = 89/183 (48.63%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +    +   +    R  ++   +I+ L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A + GLV  V   +  L+  V+L
Sbjct:   29 NTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALP----------VPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVEL 201          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SALPB (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=fadJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 54/183 (29.51%), Postives = 89/183 (48.63%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +    +   +    R  ++   +I+ L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A + GLV  V   +  L+  V+L
Sbjct:   29 NTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALP----------VPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVEL 201          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SALNS (Fatty acid oxidation complex subunit alpha OS=Salmonella newport (strain SL254) GN=fadJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 54/183 (29.51%), Postives = 89/183 (48.63%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +    +   +    R  ++   +I+ L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A + GLV  V   +  L+  V+L
Sbjct:   29 NTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALP----------VPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVEL 201          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SALHS (Fatty acid oxidation complex subunit alpha OS=Salmonella heidelberg (strain SL476) GN=fadJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 54/183 (29.51%), Postives = 89/183 (48.63%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +    +   +    R  ++   +I+ L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A + GLV  V   +  L+  V+L
Sbjct:   29 NTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALP----------VPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVEL 201          
The following BLAST results are available for this feature:
BLAST of CN181782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
FADJ_ECO455.888e-1729.57Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECO275.888e-1729.57Fatty acid oxidation complex subunit alpha OS=Esch... [more]
ECHA_PIG7.690e-1730.60Trifunctional enzyme subunit alpha, mitochondrial ... [more]
FADJ_SHELP1.004e-1629.95Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ERWCT1.004e-1628.00Fatty acid oxidation complex subunit alpha OS=Erwi... [more]
FADJ_SHIBS1.312e-1630.05Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SALTI1.312e-1629.51Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPB1.312e-1629.51Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALNS1.312e-1629.51Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALHS1.312e-1629.51Fatty acid oxidation complex subunit alpha OS=Salm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181782 ID=CN181782; Name=CN181782; organism=Citrus sinensis; type=EST; length=693bp
GGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATCGATAA
AAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATCTTAAC
CGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAATTCCC
TAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCATCGTCC
TCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAACACTA
AGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTCTCCGA
GAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGCCATCG
AGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTATCGGA
GGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCAAAAGA
TGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGATCTCG
GGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGATGGAA
TTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAGTTGGG
TCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGGTGTCA
AGCTTGTTGCCGAGGGAAATTGCTGAAAAATCTCCTCTTGCCG
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