CN181782

Overview
NameCN181782
Unique NameCN181782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2495 contig Csv1_Contig2495:6..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SALG2 (Fatty acid oxidation complex subunit alpha OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=fadJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 54/183 (29.51%), Postives = 89/183 (48.63%), Query Frame = 2 
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +    +   +    R  ++   +I+ L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A + GLV  V   +  L+  V+L
Sbjct:   29 NTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALP----------VPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVEL 201
[Close]
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SALEP (Fatty acid oxidation complex subunit alpha OS=Salmonella enteritidis PT4 (strain P125109) GN=fadJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 54/183 (29.51%), Postives = 89/183 (48.63%), Query Frame = 2 
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +    +   +    R  ++   +I+ L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A + GLV  V   +  L+  V+L
Sbjct:   29 NTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALP----------VPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVEL 201
[Close]
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SALDC (Fatty acid oxidation complex subunit alpha OS=Salmonella dublin (strain CT_02021853) GN=fadJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 54/183 (29.51%), Postives = 89/183 (48.63%), Query Frame = 2 
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +    +   +    R  ++   +I+ L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A + GLV  V   +  L+  V+L
Sbjct:   29 NTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALP----------VPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVEL 201
[Close]
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SALCH (Fatty acid oxidation complex subunit alpha OS=Salmonella choleraesuis GN=fadJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 54/183 (29.51%), Postives = 89/183 (48.63%), Query Frame = 2 
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +    +   +    R  ++   +I+ L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A + GLV  V   +  L+  V+L
Sbjct:   29 NTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALP----------VPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVEL 201
[Close]
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SALA4 (Fatty acid oxidation complex subunit alpha OS=Salmonella agona (strain SL483) GN=fadJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.312e-16
Identity = 54/183 (29.51%), Postives = 89/183 (48.63%), Query Frame = 2 
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +    +   +    R  ++   +I+ L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A + GLV  V   +  L+  V+L
Sbjct:   29 NTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALP----------VPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVEL 201
[Close]
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SALSV (Fatty acid oxidation complex subunit alpha OS=Salmonella schwarzengrund (strain CVM19633) GN=fadJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 54/183 (29.51%), Postives = 88/183 (48.09%), Query Frame = 2 
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +    +   +    R  ++   +I+ L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A   GLV  V   +  L+  V+L
Sbjct:   29 NTLKAEFAAQVRAILKQIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALP----------VPVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILTGKQLRARQALRAGLVDDVVPQTILLEAAVEL 201
[Close]
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_YERPS (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis GN=fadJ PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 2 
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF  +    L      P +  +V+ SG  D F +G D+  +++     T+ D    ++K        Q  +  I     PV+A+IHGAC+GGG+++  AC  R CS D      + EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV  V      LD  ++    G
Sbjct:   36 NTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACR---TAHDARVLAQKG-------QSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAG 212
[Close]
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_YERPP (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis (strain Pestoides F) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 2 
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF  +    L      P +  +V+ SG  D F +G D+  +++     T+ D    ++K        Q  +  I     PV+A+IHGAC+GGG+++  AC  R CS D      + EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV  V      LD  ++    G
Sbjct:   63 NTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACR---TAHDARVLAQKG-------QSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAG 239
[Close]
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_YERPN (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadJ PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 2 
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF  +    L      P +  +V+ SG  D F +G D+  +++     T+ D    ++K        Q  +  I     PV+A+IHGAC+GGG+++  AC  R CS D      + EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV  V      LD  ++    G
Sbjct:   36 NTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACR---TAHDARVLAQKG-------QSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAG 212
[Close]
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_YERPE (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis GN=fadJ PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 2 
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF  +    L      P +  +V+ SG  D F +G D+  +++     T+ D    ++K        Q  +  I     PV+A+IHGAC+GGG+++  AC  R CS D      + EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV  V      LD  ++    G
Sbjct:   36 NTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACR---TAHDARVLAQKG-------QSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAG 212
The following BLAST results are available for this feature:
BLAST of CN181782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
FADJ_SALG21.312e-1629.51Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALEP1.312e-1629.51Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALDC1.312e-1629.51Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALCH1.312e-1629.51Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALA41.312e-1629.51Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALSV1.713e-1629.51Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_YERPS2.237e-1630.48Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPP2.237e-1630.48Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPN2.237e-1630.48Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERPE2.237e-1630.48Fatty acid oxidation complex subunit alpha OS=Yers... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181782 ID=CN181782; Name=CN181782; organism=Citrus sinensis; type=EST; length=693bp
GGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATCGATAA
AAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATCTTAAC
CGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAATTCCC
TAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCATCGTCC
TCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAACACTA
AGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTCTCCGA
GAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGCCATCG
AGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTATCGGA
GGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCAAAAGA
TGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGATCTCG
GGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGATGGAA
TTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAGTTGGG
TCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGGTGTCA
AGCTTGTTGCCGAGGGAAATTGCTGAAAAATCTCCTCTTGCCG
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