CN181782

Overview
NameCN181782
Unique NameCN181782
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2495 contig Csv1_Contig2495:6..697. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_YERPA (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadJ PE=3 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF  +    L      P +  +V+ SG  D F +G D+  +++     T+ D    ++K        Q  +  I     PV+A+IHGAC+GGG+++  AC  R CS D      + EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV  V      LD  ++    G
Sbjct:   36 NTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACR---TAHDARVLAQKG-------QSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAG 212          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_YERP3 (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.237e-16
Identity = 57/187 (30.48%), Postives = 89/187 (47.59%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF  +    L      P +  +V+ SG  D F +G D+  +++     T+ D    ++K        Q  +  I     PV+A+IHGAC+GGG+++  AC  R CS D      + EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV  V      LD  ++    G
Sbjct:   36 NTLKAEFADQIATILQQAHALPKLQGLVIVSGKPDSFIAGADITMIAACR---TAHDARVLAQKG-------QSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSLDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGKQIRPRQALKMGLVDDVVPRDILLDVAIQRAKAG 212          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_YERE8 (Fatty acid oxidation complex subunit alpha OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadJ PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 58/191 (30.37%), Postives = 90/191 (47.12%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFL----QDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  +F  +  + L        +  +V+ SG  D F +G D+  +++   HT             +D R L    Q  +  I     PV+A+IHGAC+GGG+++  AC  R CS+D      + EV L +    G  QRLP +VG   A+++ LTGR+    +A ++GLV  V      LD  ++    G
Sbjct:   48 NTLKAKFAEQIAEILQQAQALSQLQGLVIISGKPDSFIAGADITMIAAC--HTA------------QDARILAQKGQSILAQIAAFPVPVVAAIHGACLGGGLELALACHSRICSQDDKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSKALDMILTGRQVRARQALKMGLVDDVVPQDILLDVAIQRAKAG 224          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_ECOLI (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12) GN=fadJ PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF ++    +  L +N  +  +V +S   D+F +G D+  + +      +    R  ++   +I  L   V          IA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V+L
Sbjct:   29 NTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIQV----------IAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVEL 201          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_ECODH (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12 / DH10B) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF ++    +  L +N  +  +V +S   D+F +G D+  + +      +    R  ++   +I  L   V          IA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V+L
Sbjct:   29 NTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIQV----------IAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVEL 201          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_ECOBW (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12 / BW2952) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.922e-16
Identity = 55/183 (30.05%), Postives = 89/183 (48.63%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKL 655
            N L  EF ++    +  L +N  +  +V +S   D+F +G D+  + +      +    R  ++   +I  L   V          IA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V+L
Sbjct:   29 NTLKAEFASQVRAIIKQLRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIQV----------IAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVEL 201          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: PAAF_ECOLI (Probable enoyl-CoA hydratase paaF OS=Escherichia coli (strain K12) GN=paaF PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 52/196 (26.53%), Postives = 92/196 (46.94%), Query Frame = 2
Query:   77 RVIYLYLNRPSQRNALSREFFTEFPKALSSLDQNPNVNAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAE 664
            RV+ L LNRP+ RNAL+     +    L +   + +++  V++G    F +G DL  ++      T  D                     ++   KP+IA+++G  +G G ++   CD+    ++A F + E+ L I    G  QRL   VG   A ++ L+G      +A++ GLVS VF +   L+  ++L ++
Sbjct:   11 RVLLLTLNRPAARNALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTR-------------PQLWARLQAFNKPLIAAVNGYALGAGCELALLCDVVVAGENARFGLPEITLGIMPGAGGTQRLIRSVGKSLASKMVLSGESITAQQAQQAGLVSDVFPSDLTLEYALQLASK 193          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_SHEHH (Fatty acid oxidation complex subunit alpha OS=Shewanella halifaxensis (strain HAW-EB4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 58/187 (31.02%), Postives = 92/187 (49.20%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIVL-SGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVKLVAEG 667
            N L  EF  E    L+ +  + ++  +VL SG  D F +G D+  L +     T+TD  + S++              +E    PV+A+I+GAC+GGG+++  AC  R CS +      V EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV      S  L   V++   G
Sbjct:   29 NTLRSEFGPEISDVLAEIKADTSIKGLVLVSGKKDSFVAGADISMLDACE---TATDAKQLSQQGHV-------VFNELESLPIPVVAAINGACLGGGLELALACHKRVCSLNPKTMMGVPEVQLGLLPGGGGTQRLPRLVGVTTALDMMLTGKQLRPKQALKMGLVDDAVPESILLRTAVEMALAG 205          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: FADJ_ESCF3 (Fatty acid oxidation complex subunit alpha OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadJ PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.817e-16
Identity = 53/182 (29.12%), Postives = 85/182 (46.70%), Query Frame = 2
Query:  116 NALSREFFTEFPKALSSLDQNPNVNAIV-LSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVK 652
            N L  EF  +    L  + +N  +  +V +S   D+F +G D+  +        +    R  ++   +I  L            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A + GLV  +   S  L   V+
Sbjct:   29 NTLKAEFAAQVRAILKEIRENKEIRGVVFISAKADNFIAGADINMIDHCNTAMEAETLARQGQQLMAEIHALP----------VPVIAAIHGACLGGGLELALACHGRICTDDPKTILGLPEVQLGLLPGSGGTQRLPRLVGLSTALDMILTGKQLRPGQALKSGLVDEIVPQSILLQAAVE 200          
BLAST of CN181782 vs. ExPASy Swiss-Prot
Match: ECHA_HUMAN (Trifunctional enzyme subunit alpha, mitochondrial OS=Homo sapiens GN=HADHA PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.985e-16
Identity = 53/183 (28.96%), Postives = 99/183 (54.10%), Query Frame = 2
Query:   80 VIYLYLNRPSQR-NALSREFFTEFPKALSSLDQNPNV-NAIVLSGTGDHFCSGIDLKTLSSVTDHTTSTDRGRFSEKFRRDIRFLQDAVTAIERCRKPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 616
            V  + +N P+ + N LS+E  +EF + ++ +  +  + +A+++S     F +G D+  L++     T  +  + S++ +R        V  +E+  KP++A+I+G+C+GGG+++  +C  R  +KD        EV L      G  QRLP +VG   A+++ LTGR      AK++GLV ++
Sbjct:   49 VAVVRINSPNSKVNTLSKELHSEFSEVMNEIWASDQIRSAVLISSKPGCFIAGADINMLAACK---TLQEVTQLSQEAQR-------IVEKLEKSTKPIVAAINGSCLGGGLEVAISCQYRIATKDRKTVLGTPEVLLGALPGAGGTQRLPKMVGVPAALDMMLTGRSIRADRAKKMGLVDQL 221          
The following BLAST results are available for this feature:
BLAST of CN181782 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
FADJ_YERPA2.237e-1630.48Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERP32.237e-1630.48Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_YERE82.922e-1630.37Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADJ_ECOLI2.922e-1630.05Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECODH2.922e-1630.05Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOBW2.922e-1630.05Fatty acid oxidation complex subunit alpha OS=Esch... [more]
PAAF_ECOLI3.817e-1626.53Probable enoyl-CoA hydratase paaF OS=Escherichia c... [more]
FADJ_SHEHH3.817e-1631.02Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ESCF33.817e-1629.12Fatty acid oxidation complex subunit alpha OS=Esch... [more]
ECHA_HUMAN4.985e-1628.96Trifunctional enzyme subunit alpha, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H13_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181782 ID=CN181782; Name=CN181782; organism=Citrus sinensis; type=EST; length=693bp
GGCCTTTTTCACATCAGCCAAACAGATGGAAGAGAGTTACAAATCGATAA
AAATCGAGGGAAAAACTCCAAATTCTCGAGTCATTTATCTGTATCTTAAC
CGTCCATCGCAACGCAACGCACTATCACGTGAATTCTTCACTGAATTCCC
TAAGGCCTTATCTTCCCTCGACCAAAATCCTAACGTCAACGCCATCGTCC
TCTCAGGCACCGGCGACCACTTCTGCTCCGGAATCGATCTGAAAACACTA
AGTTCGGTCACCGACCATACCACTTCCACCGACCGCGGCCGCTTCTCCGA
GAAGTTCCGGCGAGATATCAGGTTCTTGCAGGATGCGGTAACTGCCATCG
AGCGATGTCGGAAGCCAGTCATCGCATCTATCCACGGGGCGTGTATCGGA
GGCGGCGTCGATATTGTCACTGCCTGTGATATTCGGTTCTGTTCAAAAGA
TGCTTTTTTTTCGGTCAAAGAGGTTGACTTGGCTATCACGGCAGATCTCG
GGACTTTACAGAGGCTTCCGGCGATTGTCGGGTATGGTAACGCGATGGAA
TTGGCGTTGACGGGTCGTAGGTTTTGGGGTTTGGAGGCTAAGGAGTTGGG
TCTGGTTTCTCGGGTTTTCGGGACGAGTTATGAATTGGATCAGGGTGTCA
AGCTTGTTGCCGAGGGAAATTGCTGAAAAATCTCCTCTTGCCG
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