CN181781

Overview
NameCN181781
Unique NameCN181781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_SALPK (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A (strain AKU_12601) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = -3
Query:  387 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLV-AEGIAEKS 704
            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ L G++    +A + GLV  V   +  L+  V L   E +A+++
Sbjct:  103 PVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILIGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKERLAQRT 211          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_SALPA (Fatty acid oxidation complex subunit alpha OS=Salmonella paratyphi A GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 40/109 (36.70%), Postives = 62/109 (56.88%), Query Frame = -3
Query:  387 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLV-AEGIAEKS 704
            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ L G++    +A + GLV  V   +  L+  V L   E +A+++
Sbjct:  103 PVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVGVSTALDMILIGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKERLAQRT 211          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_ESCF3 (Fatty acid oxidation complex subunit alpha OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 38/97 (39.18%), Postives = 55/97 (56.70%), Query Frame = -3
Query:  420 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGV 704
            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+++ LTG++    +A + GLV  +   S  L   V
Sbjct:  103 PVIAAIHGACLGGGLELALACHGRICTDDPKTILGLPEVQLGLLPGSGGTQRLPRLVGLSTALDMILTGKQLRPGQALKSGLVDEIVPQSILLQAAV 199          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECH12_MYCTU (Probable enoyl-CoA hydratase echA12 OS=Mycobacterium tuberculosis GN=echA12 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 54/169 (31.95%), Postives = 81/169 (47.93%), Query Frame = -3
Query:  225 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITA-DLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAE-------GIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVF 707
            +PVIA+++G  IGGG+ +  A DIR  S  A+F    ++  +TA +LG    LP  +G   A E+ LTGR     EA+ +GLVSR       LD    + A        GI        +G  A  L +       G  +V       LL+ + +EA+++  ++R PVF
Sbjct:  119 QPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVSAEEAERIGLVSRQVPDEQLLDACYAIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFV------RLLTANFEEAVAARAEQRAPVF 281          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECH12_MYCBO (Probable enoyl-CoA hydratase echA12 OS=Mycobacterium bovis GN=echA12 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 54/169 (31.95%), Postives = 81/169 (47.93%), Query Frame = -3
Query:  225 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITA-DLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAE-------GIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVF 707
            +PVIA+++G  IGGG+ +  A DIR  S  A+F    ++  +TA +LG    LP  +G   A E+ LTGR     EA+ +GLVSR       LD    + A        GI        +G  A  L +       G  +V       LL+ + +EA+++  ++R PVF
Sbjct:  119 QPVIAAVNGPAIGGGLCLALAADIRVASSSAYFRAAGINNGLTASELGLSYLLPRAIGSSRAFEIMLTGRDVSAEEAERIGLVSRQVPDEQLLDACYAIAARMAGFSRPGIELTKRTLWSGLDAASLEAHMQAEGLGQLFV------RLLTANFEEAVAARAEQRAPVF 281          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_VIBPA (Fatty acid oxidation complex subunit alpha OS=Vibrio parahaemolyticus GN=fadJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = -3
Query:  402 PVIASIHGACIGGGVDIVTACDIRFCS--KDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEG 704
            PV+A+IHG C+GGG+++  ACD R C+        + EV L +    G  QRLP ++G   +++L LTG++    +AK+LG+V      +  LD   + + +G
Sbjct:  103 PVVAAIHGPCLGGGLELALACDYRVCTDFDKTRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRAKKAKKLGVVDACVPDTILLDVAKQFIDKG 205          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_VIBHB (Fatty acid oxidation complex subunit alpha OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=fadJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = -3
Query:  402 PVIASIHGACIGGGVDIVTACDIRFC--SKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEG 704
            PV+A+IHG C+GGG+++  ACD R C  S      + EV L +    G  QRLP ++G   +++L LTG++    +AK+LG+V      +  LD     V +G
Sbjct:  103 PVVAAIHGPCLGGGLELALACDYRVCTDSDKTRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRAKKAKKLGVVDACVPETVLLDIAKMHVEKG 205          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_SHELP (Fatty acid oxidation complex subunit alpha OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=fadJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 36/103 (34.95%), Postives = 57/103 (55.34%), Query Frame = -3
Query:  402 PVIASIHGACIGGGVDIVTACDIRFC--SKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEG 704
            PV+A+I+GAC+GGG+++  AC  R C  S      + EV L +    G  QRLP +VG   ++++ LTG++    +A ++GLV  V   S  L   + +   G
Sbjct:  101 PVVAAINGACLGGGLELALACHQRVCTDSNKTMLGLPEVQLGLLPGGGGTQRLPRLVGIAKSLDMMLTGKQLRAKQALKMGLVDDVVPESILLQTAIEMALAG 203          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_ENTS8 (Fatty acid oxidation complex subunit alpha OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 37/98 (37.76%), Postives = 54/98 (55.10%), Query Frame = -3
Query:  414 VIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRL 701
            V+A+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP +VG   A+E+ L G++    +A + GLV  V   S  L+    L
Sbjct:  104 VVAAIHGACLGGGLELALACHSRICTDDVKTLLGLPEVQLGLLPGSGGTQRLPRLVGVSTALEMILAGKQLRPRQALKAGLVDDVVPQSILLEAAAEL 201          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECHA_RAT (Trifunctional enzyme subunit alpha, mitochondrial OS=Rattus norvegicus GN=Hadha PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = -3
Query:  453 KPVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRV 707
            KPV+A+I G+C+GGG+++  AC  R  +KD      V EV L I    G  QRLP +VG   A ++ LTGR      AK++GLV ++
Sbjct:  135 KPVVAAISGSCLGGGLELAIACQYRIATKDRKTVLGVPEVLLGILPGAGGTQRLPKMVGVPAAFDMMLTGRNIRADRAKKMGLVDQL 221          
The following BLAST results are available for this feature:
BLAST of CN181781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
FADJ_SALPK2.691e-1236.70Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_SALPA2.691e-1236.70Fatty acid oxidation complex subunit alpha OS=Salm... [more]
FADJ_ESCF33.515e-1239.18Fatty acid oxidation complex subunit alpha OS=Esch... [more]
ECH12_MYCTU3.515e-1231.95Probable enoyl-CoA hydratase echA12 OS=Mycobacteri... [more]
ECH12_MYCBO3.515e-1231.95Probable enoyl-CoA hydratase echA12 OS=Mycobacteri... [more]
FADJ_VIBPA5.996e-1234.95Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_VIBHB7.830e-1236.89Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_SHELP1.023e-1134.95Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ENTS81.023e-1137.76Fatty acid oxidation complex subunit alpha OS=Ente... [more]
ECHA_RAT1.023e-1142.53Trifunctional enzyme subunit alpha, mitochondrial ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001H13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181781 ID=CN181781; Name=CN181781; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTGAATTAAAGAATGAAAACTTGATTCCTATGAAA
GGGTAAGGAATCAACTTCCTATTTTATAATTTCACTTCTGTCCTCAAATA
AAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAG
TGCGTTGCGTTGCGATGGACGGTTAAGATACAGATAAATGAAAGAAGAAA
GGGGTAATAACATCAGAGCTTGGCAAAAACAGGCTTCCTTTTCTGGATAT
TTGAAGACATTGCCTCCTTCAAATCATCGGACAGAAGCATACCGGAGTTC
CAAGTTGCCACGTAATCTAACCCTTGTTCCACAGTAAGCTCTCGGCTTCT
CAGTAAAACCGCTTTTGTCCCGGTGACGGCAAGAGGAGATTTTTCAGCAA
TTCCCTCGGCAACAAGCCTGACACCCTGATCCAATTCATAACTCGTCCCG
AAAACCCGAGAAACCAGACCCAACTCCTTAGCCTCCAAACCCCAAAACCT
ACGACCCGTCAACGCCAATTCCATCGCGTTACCATACCCGACAATCGCCG
GAAGCCTCTGTAAAGTCCCGAGATCTGCCGTGATAGCCAAGTCAACCTCT
TTGACCGAAAAAAAAGCATCTTTTGAACAGAACCGAATATCACAGGCAGT
GACAATATCGACGCCGCCTCCGATACACGCCCCGTGGATAGATGCGATGA
CTGGCTTCCGAC
back to top