CN181781

Overview
NameCN181781
Unique NameCN181781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181781_ssr104 microsatellite CN181781_ssr104:104..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2495 contig Csv1_Contig2495:362..1073. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: YNGF_BACSU (Putative enoyl-CoA hydratase/isomerase yngF OS=Bacillus subtilis GN=yngF PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 54/161 (33.54%), Postives = 84/161 (52.17%), Query Frame = -3
Query:  225 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVF 707
            +PVIA+I+G+ +GGG+++  ACD+R  ++ A   + E  LAI    G  QRLP ++G G A E   TGRR    EAKE+GLV  V      + +   L A  I+   P+AV   K  + +  E  +  GL          + + D +E + +  +KR+ V+
Sbjct:   98 QPVIAAINGSALGGGLELALACDLRIATEAAVLGLPETGLAIIPGAGGTQRLPRLIGRGKAKEFIYTGRRVTAHEAKEIGLVEHVTAPCDLMPKAEELAA-AISANGPIAVRQAKFAINKGLETDLATGLAIEQKAYEQTIPTKDRREGLQAFQEKRRAVY 257          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECHM_RAT (Enoyl-CoA hydratase, mitochondrial OS=Rattus norvegicus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 55/162 (33.95%), Postives = 86/162 (53.09%), Query Frame = -3
Query:  225 RKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVF 710
            +KPVIA+++G  +GGG ++   CDI +  + A F   E+ L      G  QRL   VG   AME+ LTG R    +AK+ GLVS++F     +++ ++  AE IA  S + V   K  +  + E+T+ +G             +DD +E MS+ ++KRK  F
Sbjct:  127 KKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETLVEEAIQ-CAEKIANNSKIIVAMAKESVNAAFEMTLTEGNKLEKKLFYSTFATDDRREGMSAFVEKRKANF 287          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: CAID_SALPB (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = -3
Query:  225 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVAT----WNSGMLLSDDLKEAMSSNIQKRKPVF 707
            KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PLA+   K +   + E+ VE+G  Y+ +        +L S+D  E   +  +KR PV+
Sbjct:   95 KPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQS-ELMDSARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVW 258          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: CAID_SALG2 (Carnitinyl-CoA dehydratase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=caiD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = -3
Query:  225 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVAT----WNSGMLLSDDLKEAMSSNIQKRKPVF 707
            KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PLA+   K +   + E+ VE+G  Y+ +        +L S+D  E   +  +KR PV+
Sbjct:   95 KPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQS-ELMDSARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVW 258          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: CAID_SALEP (Carnitinyl-CoA dehydratase OS=Salmonella enteritidis PT4 (strain P125109) GN=caiD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = -3
Query:  225 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVAT----WNSGMLLSDDLKEAMSSNIQKRKPVF 707
            KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PLA+   K +   + E+ VE+G  Y+ +        +L S+D  E   +  +KR PV+
Sbjct:   95 KPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQS-ELMDSARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVW 258          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: CAID_SALDC (Carnitinyl-CoA dehydratase OS=Salmonella dublin (strain CT_02021853) GN=caiD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.287e-18
Identity = 55/165 (33.33%), Postives = 88/165 (53.33%), Query Frame = -3
Query:  225 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVAT----WNSGMLLSDDLKEAMSSNIQKRKPVF 707
            KPVIA+++G   GGG ++  A D   C+++A F++ E  L I  D G + RLP ++      E+ +TGRR    EA   G+V+RV   S EL    R +A+ +   +PLA+   K +   + E+ VE+G  Y+ +        +L S+D  E   +  +KR PV+
Sbjct:   95 KPVIAAVNGYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQS-ELMDSARELAQQLVNSAPLAIAALKEIYRATSEMPVEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVW 258          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECHM_MOUSE (Enoyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Echs1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.312e-18
Identity = 54/162 (33.33%), Postives = 86/162 (53.09%), Query Frame = -3
Query:  225 RKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVF 710
            +KPVIA+++G  +GGG ++   CDI +  + A F   E+ L      G  QRL   VG   AME+ LTG R    +AK+ GLVS++F     +++ ++  AE IA  S + V   K  +  + E+T+ +G             +DD +E M++ ++KRK  F
Sbjct:  127 KKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVEKLVEEAIQ-CAEKIASNSKIVVAMAKESVNAAFEMTLTEGNKLEKRLFYSTFATDDRREGMTAFVEKRKANF 287          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: CAID_SALAR (Carnitinyl-CoA dehydratase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=caiD PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.550e-18
Identity = 54/163 (33.13%), Postives = 88/163 (53.99%), Query Frame = -3
Query:  231 KPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWN----SGMLLSDDLKEAMSSNIQKRKP 707
            KPVIA+++G   GGG ++  A D   C+  A F++ E  L I  D G + RLP I+      ++ +TGRR    EA   G+V+RV  + +EL    R +A  + + +PLAV   K +   +R+++VE+G  Y+ + +      +L S+D  E   +  +KR P
Sbjct:   95 KPVIAAVNGYAFGGGFELALAADFIICADHASFALPEAKLGIVPDSGGVLRLPKILPPAIVNDMVMTGRRMTAEEALRWGVVNRVV-SPHELLDSARELARQLVQSAPLAVAALKEITRTTRDMSVEEGYRYIRSGSLRHYPAVLHSEDALEGPLAFAEKRDP 256          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECHM_BOVIN (Enoyl-CoA hydratase, mitochondrial OS=Bos taurus GN=ECHS1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.247e-17
Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = -3
Query:  225 RKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVF 710
            +KPVIA+++G  +GGG ++   CDI +  + A F   E+ +      G  QRL   VG   AME+ LTG R    +AK+ GLVS++F     +++ ++  AE IA  S +     K  +  + E+T+ +G+            ++D KE M++ ++KRK  F
Sbjct:  127 KKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILIGTIPGAGGTQRLTRAVGKSLAMEMVLTGDRISAQDAKQAGLVSKIFPVETVVEEAIQ-CAEKIASNSKIVTAMAKESVNAAFEMTLAEGVKLEKKLFYSTFATEDRKEGMAAFVEKRKANF 287          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECHA8_MYCLE (Probable enoyl-CoA hydratase echA8 OS=Mycobacterium leprae GN=echA8 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.629e-17
Identity = 56/162 (34.57%), Postives = 84/162 (51.85%), Query Frame = -3
Query:  225 RKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVF 710
            R P+IA++ G  +GGG ++   CD+   +  A F   E+ L +   +G  QRL   +G   AM+L LTGR     EA+  GLVSRV   + +L    + VA  I++ S  A    K  + RS E T+ +GL +         ++DD  E M++ I+KR P F
Sbjct:   94 RTPMIAAVAGYALGGGCELAMMCDLLIAADTAKFGQPEIKLGVLPGMGGSQRLTRAIGKAKAMDLILTGRTIDAAEAERSGLVSRVV-LADDLLPEAKAVATTISQMSRSATRMAKEAVNRSFESTLAEGLLHERRLFHSTFVTDDQSEGMAAFIEKRAPQF 254          
The following BLAST results are available for this feature:
BLAST of CN181781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
YNGF_BACSU4.287e-1833.54Putative enoyl-CoA hydratase/isomerase yngF OS=Bac... [more]
ECHM_RAT4.287e-1833.95Enoyl-CoA hydratase, mitochondrial OS=Rattus norve... [more]
CAID_SALPB4.287e-1833.33Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALG24.287e-1833.33Carnitinyl-CoA dehydratase OS=Salmonella gallinaru... [more]
CAID_SALEP4.287e-1833.33Carnitinyl-CoA dehydratase OS=Salmonella enteritid... [more]
CAID_SALDC4.287e-1833.33Carnitinyl-CoA dehydratase OS=Salmonella dublin (s... [more]
ECHM_MOUSE7.312e-1833.33Enoyl-CoA hydratase, mitochondrial OS=Mus musculus... [more]
CAID_SALAR9.550e-1833.13Carnitinyl-CoA dehydratase OS=Salmonella arizonae ... [more]
ECHM_BOVIN1.247e-1732.10Enoyl-CoA hydratase, mitochondrial OS=Bos taurus G... [more]
ECHA8_MYCLE3.629e-1734.57Probable enoyl-CoA hydratase echA8 OS=Mycobacteriu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181781 ID=CN181781; Name=CN181781; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTGAATTAAAGAATGAAAACTTGATTCCTATGAAA
GGGTAAGGAATCAACTTCCTATTTTATAATTTCACTTCTGTCCTCAAATA
AAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAG
TGCGTTGCGTTGCGATGGACGGTTAAGATACAGATAAATGAAAGAAGAAA
GGGGTAATAACATCAGAGCTTGGCAAAAACAGGCTTCCTTTTCTGGATAT
TTGAAGACATTGCCTCCTTCAAATCATCGGACAGAAGCATACCGGAGTTC
CAAGTTGCCACGTAATCTAACCCTTGTTCCACAGTAAGCTCTCGGCTTCT
CAGTAAAACCGCTTTTGTCCCGGTGACGGCAAGAGGAGATTTTTCAGCAA
TTCCCTCGGCAACAAGCCTGACACCCTGATCCAATTCATAACTCGTCCCG
AAAACCCGAGAAACCAGACCCAACTCCTTAGCCTCCAAACCCCAAAACCT
ACGACCCGTCAACGCCAATTCCATCGCGTTACCATACCCGACAATCGCCG
GAAGCCTCTGTAAAGTCCCGAGATCTGCCGTGATAGCCAAGTCAACCTCT
TTGACCGAAAAAAAAGCATCTTTTGAACAGAACCGAATATCACAGGCAGT
GACAATATCGACGCCGCCTCCGATACACGCCCCGTGGATAGATGCGATGA
CTGGCTTCCGAC
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