CN181781

Overview
NameCN181781
Unique NameCN181781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN181781_ssr104 microsatellite CN181781_ssr104:104..148. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2495 contig Csv1_Contig2495:362..1073. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_PHOLL (Fatty acid oxidation complex subunit alpha OS=Photorhabdus luminescens subsp. laumondii GN=fadJ PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 53/175 (30.29%), Postives = 86/175 (49.14%), Query Frame = -3
Query:  216 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAV----------LLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVFAKL 704
            PV+A+IHGAC+GGG+++  AC  R CS+D      + EV L +    G  QRLP ++G  +A+++ LTG++    +A  LGLV         LD  +  V +GI  + PL       V          ++R + L   +G  Y A      ++ + L++ MS  ++     F +L
Sbjct:  118 PVVAAIHGACLGGGLELALACHWRVCSQDDKTRLGLPEVQLGLLPGSGGTQRLPRLIGVSSALDIMLTGKQLRAKQALRLGLVDDAVPLDILLDIAIEKVKKGIPVRKPLPWQQRLLVGPVGRYFLFNIVRKKTLAKTRG-HYPAPERIIEVVKEGLEKGMSQGLRAEAVAFGEL 291          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_ERWCT (Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora subsp. atroseptica GN=fadJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 47/122 (38.52%), Postives = 67/122 (54.92%), Query Frame = -3
Query:  345 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRS 704
            PV+A+IHGAC+GGG+++  ACD R CS D      + EV L +    G  QRLP ++G  +A++L LTGR     +A   GLV         LD  V ++ +G  +  PL   G ++ LL S
Sbjct:  117 PVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPGSGGTQRLPRLIGLDSALDLILTGRHLRAGQALRQGLVDEAVPHDILLDTAVEILKKGKRKAVPL---GWRSRLLNS 235          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_ECOLC (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fadJ PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.601e-15
Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = -3
Query:  375 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAV 704
            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V LV +      PL V
Sbjct:  103 PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVELVKQDRPSSRPLPV 214          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: ECHD2_MOUSE (Enoyl-CoA hydratase domain-containing protein 2, mitochondrial OS=Mus musculus GN=Echdc2 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.397e-15
Identity = 50/163 (30.67%), Postives = 81/163 (49.69%), Query Frame = -3
Query:  225 PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVR---LVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKPVF 704
            P IA++ G  +GGG+++  ACD+R  +  A   + E    +    G  QRLP  +G   A EL  TGRR  G +A+ELGLV+     + E +        +A+ I  ++P+AV   K  + R  E+ +  G+       +  + + D  E M++  +KR P F
Sbjct:  131 PTIAAMDGFALGGGLELALACDLRIAASSAVMGLIETTRGLLPGAGGTQRLPRCLGVALAKELIFTGRRLNGAQARELGLVNHAVAQNEEGNAAYHRALALAQEILPQAPIAVRLGKVAIDRGMEVDIASGMAIEQMCYAQNIPTQDRLEGMAAFREKRAPKF 293          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_ECOLU (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.436e-15
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = -3
Query:  375 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAV 704
            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V L  +      PL V
Sbjct:  103 PVIAAIHGACLGGGLELALACHGRMCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPQSILLEAAVELAKQDRPSSRPLPV 214          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_SHEAM (Fatty acid oxidation complex subunit alpha OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=fadJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.794e-15
Identity = 52/165 (31.52%), Postives = 82/165 (49.70%), Query Frame = -3
Query:  240 PVIASIHGACIGGGVDIVTACDIRFCSKDA--FFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPL---AVTGTKAVLLRSRELTVEQGLDYV-----ATWNSGMLLSDDLKEAMSSNIQK 704
            PV+A+IHGAC+GGG+++  AC  R CS  +     V EV L +    G  QRLP ++G   A++L LTG++    +A ++GLV  V   S  LD  + +   G   + PL    VT         R +  +Q    V       + S + + D ++E M+  ++K
Sbjct:  101 PVVAAIHGACLGGGLELALACHQRVCSDSSKTMLGVPEVQLGLLPGGGGTQRLPRLIGIAKALDLMLTGKQVRPKQAVKMGLVDDVVPESILLDTAIEMALAGKKTRKPLKQPLVTKLLEGTPVGRNIMFDQATKQVLKKTQGNYPSPLKIIDCVREGMAKGMEK 265          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_ECOUT (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain UTI89 / UPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = -3
Query:  375 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAV 704
            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V L  +      PL V
Sbjct:  103 PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEAAVELAKQDRPSSRPLPV 214          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_ECOL6 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O6 GN=fadJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = -3
Query:  375 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAV 704
            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V L  +      PL V
Sbjct:  103 PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVELAKQDRPSSRPLPV 214          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_ECOL5 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = -3
Query:  375 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAV 704
            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V L  +      PL V
Sbjct:  103 PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEAAVELAKQDRPSSRPLPV 214          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_ECOK1 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O1:K1 / APEC GN=fadJ PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.567e-15
Identity = 44/112 (39.29%), Postives = 62/112 (55.36%), Query Frame = -3
Query:  375 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAV 704
            PVIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V L  +      PL V
Sbjct:  103 PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQAVKLGLVDDVVPHSILLEAAVELAKQDRPSSRPLPV 214          
The following BLAST results are available for this feature:
BLAST of CN181781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
FADJ_PHOLL2.601e-1530.29Fatty acid oxidation complex subunit alpha OS=Phot... [more]
FADJ_ERWCT2.601e-1538.52Fatty acid oxidation complex subunit alpha OS=Erwi... [more]
FADJ_ECOLC2.601e-1540.18Fatty acid oxidation complex subunit alpha OS=Esch... [more]
ECHD2_MOUSE3.397e-1530.67Enoyl-CoA hydratase domain-containing protein 2, m... [more]
FADJ_ECOLU4.436e-1539.29Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_SHEAM5.794e-1531.52Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_ECOUT7.567e-1539.29Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOL67.567e-1539.29Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOL57.567e-1539.29Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOK17.567e-1539.29Fatty acid oxidation complex subunit alpha OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181781 ID=CN181781; Name=CN181781; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTGAATTAAAGAATGAAAACTTGATTCCTATGAAA
GGGTAAGGAATCAACTTCCTATTTTATAATTTCACTTCTGTCCTCAAATA
AAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAG
TGCGTTGCGTTGCGATGGACGGTTAAGATACAGATAAATGAAAGAAGAAA
GGGGTAATAACATCAGAGCTTGGCAAAAACAGGCTTCCTTTTCTGGATAT
TTGAAGACATTGCCTCCTTCAAATCATCGGACAGAAGCATACCGGAGTTC
CAAGTTGCCACGTAATCTAACCCTTGTTCCACAGTAAGCTCTCGGCTTCT
CAGTAAAACCGCTTTTGTCCCGGTGACGGCAAGAGGAGATTTTTCAGCAA
TTCCCTCGGCAACAAGCCTGACACCCTGATCCAATTCATAACTCGTCCCG
AAAACCCGAGAAACCAGACCCAACTCCTTAGCCTCCAAACCCCAAAACCT
ACGACCCGTCAACGCCAATTCCATCGCGTTACCATACCCGACAATCGCCG
GAAGCCTCTGTAAAGTCCCGAGATCTGCCGTGATAGCCAAGTCAACCTCT
TTGACCGAAAAAAAAGCATCTTTTGAACAGAACCGAATATCACAGGCAGT
GACAATATCGACGCCGCCTCCGATACACGCCCCGTGGATAGATGCGATGA
CTGGCTTCCGAC
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