CN181781

Overview
NameCN181781
Unique NameCN181781
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_ECODH (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12 / DH10B) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  375 VIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAV 701
            VIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V L  +      PL V
Sbjct:  104 VIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVELAKKERPSSRPLPV 214          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_ECOBW (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain K12 / BW2952) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 43/111 (38.74%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  375 VIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAV 701
            VIA+IHGAC+GGG+++  AC  R C+ D      + EV L +    G  QRLP ++G   A+E+ LTG++    +A +LGLV  V   S  L+  V L  +      PL V
Sbjct:  104 VIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVELAKKERPSSRPLPV 214          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_VIBVY (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus (strain YJ016) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 53/177 (29.94%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  216 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRS---RELTVEQGL---------DYVATWNSGMLLSDDLKEAMSSNIQKRKPVFAKL 704
            PV+A+IHG C+GGG+++  ACD R CS D      + EV L +    G  QRLP ++G   +++L LTG++    +AK+LG+V      +  LD   + V +G  +++   VT  + +L  S   R+   EQ           +Y AT     ++   L++ M   ++     F +L
Sbjct:  103 PVVAAIHGPCLGGGLELALACDFRVCSDDDATRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRAKKAKKLGVVDACVPQTILLDVAKQFVEKG-KKRAKQKVTTKEKLLSGSGLGRKFVFEQAAKKTHEKTRGNYPATVAILQVIQHGLEKGMKQGLELEAKRFGEL 278          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_SHESA (Fatty acid oxidation complex subunit alpha OS=Shewanella sp. (strain ANA-3) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 50/165 (30.30%), Postives = 81/165 (49.09%), Query Frame = -3
Query:  240 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRS---RELTVEQGLDYVATWNSG-----MLLSDDLKEAMSSNIQK 704
            PV+A+IHGAC+GGG+++  AC  R CS D      V EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV+ V   +  L   V +   G     P+  +    +L  +   R +  +Q    V     G       + D +++ M+  +QK
Sbjct:  101 PVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKRTAKPVKKSLVNQLLEGTGFGRNIIFDQAAKQVVKKTQGNYPAPAKIIDCVRQGMAKGMQK 265          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_SHEB5 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadJ PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.093e-13
Identity = 43/119 (36.13%), Postives = 64/119 (53.78%), Query Frame = -3
Query:  354 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVL 704
            PV+A+IHGAC+GGG+++  AC  R CS D      V EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV+ V   +  L   V +   G     P+  +    VL
Sbjct:  101 PVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKRAPKPVKKSLVNQVL 219          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_VIBVU (Fatty acid oxidation complex subunit alpha OS=Vibrio vulnificus GN=fadJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 53/177 (29.94%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  216 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRS---RELTVEQGL---------DYVATWNSGMLLSDDLKEAMSSNIQKRKPVFAKL 704
            PV+A+IHG C+GGG+++  ACD R CS D      + EV L +    G  QRLP ++G   +++L LTG++    +AK+LG+V      +  LD   + V +G  +++   VT  + +L  S   R+   EQ           +Y AT     ++   L++ M   ++     F +L
Sbjct:  103 PVVAAIHGPCLGGGLELALACDFRVCSDDDATRLGLPEVQLGLLPGSGGTQRLPRLIGLLPSLDLILTGKQLRANKAKKLGVVDACVPQTILLDVAKQFVEKG-KKRAKQKVTTKEKLLSGSGLGRKFVFEQAAKKTHEKTRGNYPATVAILQVIQHGLEKGMKQGLELEAKRFGEL 278          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: AUHM_MOUSE (Methylglutaconyl-CoA hydratase, mitochondrial OS=Mus musculus GN=Auh PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.427e-13
Identity = 51/161 (31.68%), Postives = 77/161 (47.83%), Query Frame = -3
Query:  231 PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRL---VAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKP 704
            P IA+I G  +GGG+++  ACDIR  +  A   + E  LAI    G  QRLP  +G   A EL  + R   G EAK +GL+S V   + E D   R    +A     + P+A+   K  + +  E+ +  GL       +  + + D  E + +  +KR P
Sbjct:  149 PTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGQEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTISTKDRLEGLLAFKEKRPP 309          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: FADJ_SHEON (Fatty acid oxidation complex subunit alpha OS=Shewanella oneidensis GN=fadJ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 50/165 (30.30%), Postives = 82/165 (49.70%), Query Frame = -3
Query:  240 PVIASIHGACIGGGVDIVTACDIRFCSKD--AFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRS---RELTVEQGLDYVATWNSG-----MLLSDDLKEAMSSNIQK 704
            PV+A+IHGAC+GGG+++  AC  R CS D      V EV L +    G  QRLP +VG   A+++ LTG++    +A ++GLV+ V   +  L   V +   G     P+  +    +L  +   R +  +Q    VA    G       + D +++ ++  +QK
Sbjct:  103 PVVAAIHGACLGGGLELALACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQALKMGLVNDVVPQTILLQTAVEMALAGKQIAKPVKKSLVNQLLEGTGFGRNIIFDQAAKQVAKKTQGNYPAPAKIIDCVRQGIAKGMQK 267          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: CRT_CLODI (3-hydroxybutyryl-CoA dehydratase (Fragment) OS=Clostridium difficile GN=crt PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 52/153 (33.99%), Postives = 80/153 (52.29%), Query Frame = -3
Query:  252 RKPVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRLVAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSS 710
            +K VIA+++G  +GG  ++  ACDIR  S  A F   EV L IT   G  QRL  +VG   A EL  TG+     EA+++GLV+RV      +++ V  +A+ IA+ + LAV  +K  +    +  +  G+D  +        + D KE + S
Sbjct:    3 KKVVIAAVNGFALGG-CELAMACDIRIASAKAKFGQPEVTLGITPGYGGTQRLTRLVGMAKAKELIFTGQVIKADEAEKIGLVNRVVEPDILIEE-VEKLAKIIAKNAQLAVRYSKEAIQLGAQTDINTGIDIESNLFGLCFSTKDQKEGIVS 153          
BLAST of CN181781 vs. ExPASy Swiss-Prot
Match: AUHM_HUMAN (Methylglutaconyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=AUH PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 51/161 (31.68%), Postives = 77/161 (47.83%), Query Frame = -3
Query:  231 PVIASIHGACIGGGVDIVTACDIRFCSKDAFFSVKEVDLAITADLGTLQRLPAIVGYGNAMELALTGRRFWGLEAKELGLVSRVFGTSYELDQGVRL---VAEGIAEKSPLAVTGTKAVLLRSRELTVEQGLDYVATWNSGMLLSDDLKEAMSSNIQKRKP 704
            P IA+I G  +GGG+++  ACDIR  +  A   + E  LAI    G  QRLP  +G   A EL  + R   G EAK +GL+S V   + E D   R    +A     + P+A+   K  + +  E+ +  GL       +  + + D  E + +  +KR P
Sbjct:  174 PTIAAIDGLALGGGLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEEACYAQTIPTKDRLEGLLAFKEKRPP 334          
The following BLAST results are available for this feature:
BLAST of CN181781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 135
Match NameE-valueIdentityDescription
FADJ_ECODH8.366e-1438.74Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOBW8.366e-1438.74Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_VIBVY1.093e-1329.94Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
FADJ_SHESA1.093e-1330.30Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHEB51.093e-1336.13Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_VIBVU1.427e-1329.94Fatty acid oxidation complex subunit alpha OS=Vibr... [more]
AUHM_MOUSE1.427e-1331.68Methylglutaconyl-CoA hydratase, mitochondrial OS=M... [more]
FADJ_SHEON1.864e-1330.30Fatty acid oxidation complex subunit alpha OS=Shew... [more]
CRT_CLODI1.864e-1333.993-hydroxybutyryl-CoA dehydratase (Fragment) OS=Clo... [more]
AUHM_HUMAN1.864e-1331.68Methylglutaconyl-CoA hydratase, mitochondrial OS=H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181781 ID=CN181781; Name=CN181781; organism=Citrus sinensis; type=EST; length=712bp
TTTTTTTTTTTTTTTTTGAATTAAAGAATGAAAACTTGATTCCTATGAAA
GGGTAAGGAATCAACTTCCTATTTTATAATTTCACTTCTGTCCTCAAATA
AAATATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAG
TGCGTTGCGTTGCGATGGACGGTTAAGATACAGATAAATGAAAGAAGAAA
GGGGTAATAACATCAGAGCTTGGCAAAAACAGGCTTCCTTTTCTGGATAT
TTGAAGACATTGCCTCCTTCAAATCATCGGACAGAAGCATACCGGAGTTC
CAAGTTGCCACGTAATCTAACCCTTGTTCCACAGTAAGCTCTCGGCTTCT
CAGTAAAACCGCTTTTGTCCCGGTGACGGCAAGAGGAGATTTTTCAGCAA
TTCCCTCGGCAACAAGCCTGACACCCTGATCCAATTCATAACTCGTCCCG
AAAACCCGAGAAACCAGACCCAACTCCTTAGCCTCCAAACCCCAAAACCT
ACGACCCGTCAACGCCAATTCCATCGCGTTACCATACCCGACAATCGCCG
GAAGCCTCTGTAAAGTCCCGAGATCTGCCGTGATAGCCAAGTCAACCTCT
TTGACCGAAAAAAAAGCATCTTTTGAACAGAACCGAATATCACAGGCAGT
GACAATATCGACGCCGCCTCCGATACACGCCCCGTGGATAGATGCGATGA
CTGGCTTCCGAC
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