CN181779

Overview
NameCN181779
Unique NameCN181779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length754
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9664 contig Csv1_Contig9664:762..1515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181779 vs. ExPASy Swiss-Prot
Match: CATL_DROME (Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 5.588e-11
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = -3 
Query:  336 GPVEVSFTV-YEDFAHYKSGVYKHITGDVMG-GHAVKLIGWGTSDDGEDYWILANQWNRSWGADGYFKIKRG-SNECGI 563
            GPV V+    +E F  Y  GVY     D     H V ++G+GT + GEDYW++ N W  +WG  G+ K+ R   N+CGI
Sbjct:  284 GPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVGFGTDESGEDYWLVKNSWGTTWGDKGFIKMLRNKENQCGI 362
The following BLAST results are available for this feature:
BLAST of CN181779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
CATL_DROME5.588e-1140.51Cathepsin L OS=Drosophila melanogaster GN=Cp1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181779 ID=CN181779; Name=CN181779; organism=Citrus sinensis; type=EST; length=754bp
CCCTTTTTTAGCAGACGGAGCATGATGTGACATTTTTCATCTAAACGAAT
AATTCGGCGAGGAGAAACGAAGTTATTACAACTGGTTCTATTTTTACACA
CAACATTAAACTCCATTAATACATTCAATTATGCAAGACGGGAGCTTCCC
ATTTCATGCCTTGATAGCTTAGGTTCAACGATACACCCCTATAGCTACAC
ATTTGATATATAAATAACAACATGAAGGTATAGCAAAGTCTGCTCTCAAG
CTGAAGCATCCTCAAACATATCTGCACTTGTAATCTCTTTGACAAGATTT
TTGGATGAAGGCAAACCAGCAACCACATCCTCTTCAATACCACACTCATT
TGATCCTCTTTTAATCTTGAAGTAACCATCCGCACCCCAGCTTCTATTCC
ACTGATTAGCGAGAATCCAGTAATCCTCGCCATCATCACTAGTTCCCCAA
CCAATAAGCTTAACAGCATGACCCCCCATTACATCGCCTGTGATGTGTTT
GTAGACCCCAGATTTGTAGTGAGCAAAATCCTCATAAACTGTGAAGGAAA
CTTCAACTGGTCCATTCTTGTAAATTTCTGCCATTATGTCCTCTGGATCA
GAATTGATTCTATATGCACTAATACTGTAGTGCTTTGAATTCCTCCAAAG
CTGGTTTTTCTTGACGCACTTCCTCACACACTTTGGAGTAAGATATGCCG
GCTCACAACCAGGGGTGGGAACAGCCCAGTACTATCAAAGTAGGGATCAC
ACTC
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