CN188721

Overview
NameCN188721
Unique NameCN188721
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5755 contig Csv1_Contig5755:332..1104. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188721 vs. ExPASy Swiss-Prot
Match: NAC69_ARATH (NAC domain-containing protein 69 OS=Arabidopsis thaliana GN=NAC69 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16
Identity = 48/130 (36.92%), Postives = 69/130 (53.08%), Query Frame = -3
Query:  344 IPEVDVCKSDPWDLPGDVAQER-----YFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQ-IVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNFAQTPAVATDNWVLCRIFLK 715
            I E+++C  DP  LP     +      YFF  +E        + R T SGYWKATG+D++I   RGN+  +G+KKTLV+Y G+ P G  T W+MHEY +      PQ +           N+V+C++  K
Sbjct:   37 ISEINICSYDPIYLPSLSKIKSDDPVWYFFCPKEYTSAKKKVTKRTTSSGYWKATGVDRKIKDKRGNRGEIGIKKTLVYYEGRVPKGVWTPWVMHEYHITC---LPQDQR----------NYVICQVMYK 153          
BLAST of CN188721 vs. ExPASy Swiss-Prot
Match: NAC5_ARATH (NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.930e-14
Identity = 42/98 (42.86%), Postives = 55/98 (56.12%), Query Frame = -3
Query:  443 IIPEVDVCKSDPWDLPGDVAQER-----YFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGN-QIVGMKKTLVFYRGKPPHGSRTDWIMHEY 718
            +I  VD+C  DPWDLP     +      YFF  +E KY  G+R  R T SG+WK TG+   I    G+ + +G K+ LVF   K   GS++DW MHEY
Sbjct:   36 VISTVDICSFDPWDLPSHSRMKTRDQVWYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVF---KNHGGSKSDWAMHEY 130          
BLAST of CN188721 vs. ExPASy Swiss-Prot
Match: NAC3_ARATH (NAC domain-containing protein 3 OS=Arabidopsis thaliana GN=NAC003 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.383e-12
Identity = 43/98 (43.88%), Postives = 56/98 (57.14%), Query Frame = -3
Query:  443 IPEVDVCKSDPWDLP-------GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEY 715
            I  V VC+ DPW+LP        DVA    FF  +E KY  G++  R T SG+WK+TG  K I   R  Q +G KK L+FY  K    S++DW++HEY
Sbjct:   37 INTVPVCRLDPWELPCQSRIKLKDVAW--CFFRPKENKYGRGDQQMRKTKSGFWKSTGRPKPI--MRNRQQIGEKKILMFYTSKE---SKSDWVIHEY 127          
The following BLAST results are available for this feature:
BLAST of CN188721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
NAC69_ARATH5.999e-1636.92NAC domain-containing protein 69 OS=Arabidopsis th... [more]
NAC5_ARATH1.930e-1442.86NAC domain-containing protein 5 OS=Arabidopsis tha... [more]
NAC3_ARATH1.383e-1243.88NAC domain-containing protein 3 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006K09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188721 ID=CN188721; Name=CN188721; organism=Citrus sinensis; type=EST; length=774bp
TTGATGATGATGGCTAATTGGGTATTCTGATTTTTCTACCCTTAAAGGCC
AATTACTTGTACAGAACACTAATTAAAAAGCTTTAAATTATTGAAAATGT
TTACTGCTGTTTTCTTCTAAAGTAAGGGAAGCTATTGCAACTACTCTCTT
CATGATCGTCTGATTCATTTGAAGAAACTTCAGTGACTCCACTTGAGCCT
GAGGAAGATGAAGTTGGAACAAGGTTCAAGTCAGCCCTTTCCTCCTTTCT
CATAAAATCATAAAAAACCGGCTTGGGCCCGTTAGCCCTGGTTCCTCCAA
TTTCGGTGCACGTTTCCTCATCCTCACTCTTGGCTCCTCTTTTCTTCAAA
AAGATGCGGCATAGAACCCAATTGTCCGTTGCCACAGCTGGGGTCTGGGC
GAAGTTTTTCTTTTGAGGGGCATTGGCAGCAGTAACAAGGCGGTATTCAT
GCATGATCCAATCAGTCCTAGAGCCGTGTGGTGGCTTGCCTCTATAAAAA
ACGAGAGTTTTTTTCATTCCCACGATTTGGTTGCCCCTGGAAGTCGCAAT
TTGCTTGTCAAGCCCAGTTGCCTTCCAATAACCAGACCCCGTGGCCCTGT
TCGATCTGTTCCCGTTTGGGTACTTAGCTTCCCTTGTGCTGAAAAAATAC
CTCTCTTGCGCCACATCACCTGGCAAATCCCAAGGATCAGACTTGCAAAC
ATCAACTTCAGGAATTATGGAAGCGGGCAAGGGGCAGGCAAAAAATCTTG
CGCTTTCAGTACTGAACAACAAGT
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