CN188720

Overview
NameCN188720
Unique NameCN188720
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12127 contig Csv1_Contig12127:429..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188720 vs. ExPASy Swiss-Prot
Match: MTND_DICDI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Dictyostelium discoideum GN=adi1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.321e-30
Identity = 64/142 (45.07%), Postives = 89/142 (62.68%), Query Frame = 2
Query:  146 HKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNR 571
            + +  + +SLD L E  VL + +D +     E L+ + ++RGY   D  ++  E  P  E+K+K FFEEHLH DEEIR+ + G G+FD+RD N+KW++I  KKG +I++PA  YHRF LD    I AMRLF   P W P NR
Sbjct:    6 YDNESDVISLDYLKEHNVLYFPMDREKENYKEPLETLCKERGYKNRDEVKLSKET-PGLEDKLKIFFEEHLHDDEEIRFILDGCGFFDIRDKNDKWVKIKEKKGDLIIVPANMYHRFALDESRNIHAMRLFTDAPKWVPINR 146          
BLAST of CN188720 vs. ExPASy Swiss-Prot
Match: MTND_SCHPO (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Schizosaccharomyces pombe GN=adi1 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.332e-27
Identity = 72/173 (41.62%), Postives = 100/173 (57.80%), Query Frame = 2
Query:  107 YMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPN-YEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNR---PHDHLPARKGYVQN 613
            Y+   + DQR P+  D K  VS + L    V     D D +   + L K   + G+   D   V  + L + Y+  +K FFEEHLH DEEIR  + G+GYFDVR  +++W+RI+V+KG +I+LP G YHRFT  TD+YI AMRLF  +P W   +R     + L ARK Y+ +
Sbjct:    4 YIFQDEGDQRKPN--DSKIEVSAEDLEAAKVSYRHHDGDLHTFADGLMK---EYGFKNRDEVVVSRKGLGDRYDNMVKKFFEEHLHEDEEIRLILDGNGYFDVRSVDDRWVRIFVEKGDLIILPPGIYHRFTTTTDDYIHAMRLFHENPKWIALSRTDSTSEELDARKSYLNS 171          
BLAST of CN188720 vs. ExPASy Swiss-Prot
Match: MTND_BACSU (Acireductone dioxygenase OS=Bacillus subtilis GN=mtnD PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.861e-14
Identity = 47/162 (29.01%), Postives = 78/162 (48.15%), Query Frame = 2
Query:   77 DPREEVIQAWYMDDSDEDQRLPHHKDPKEFVSLDQLSELGVLSWRLDADNYETDEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 562
            D +E + + W      +  RLP H   K  ++ ++  ++         D +ET  E+K I   RGY   D   +     P  +E ++NF  EH HTD+E+R+ V+G G F ++  +  +  + +  G +I +P    H FTL  D  + A+R+FV    W P
Sbjct:   25 DSQEVIYEQW------DITRLPEHLSEKYDLTEEEKQQI--------LDTFET--EIKDISTRRGYKAQDVISLSDSN-PKLDELLENFKREHHHTDDEVRFIVSGHGIFVIQGQDGTFFDVRLNPGDLISVPENIRHYFTLQEDRKVVAVRIFVTTEGWVP 169          
BLAST of CN188720 vs. ExPASy Swiss-Prot
Match: MTND_EXIS2 (Acireductone dioxygenase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=mtnD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 2
Query:  242 ELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 562
            E+  + E RGY   D   +  +  PN +E + NF +EH HTD+E+R+ V+G G F ++D    +  I +  G +I +P    H FTL  D  + A+R+FV    W P
Sbjct:   63 EITDVSERRGYQTADIISLS-DATPNLDELLVNFQKEHHHTDDEVRFIVSGHGVFAIQDDEVGYYNIELNPGDLISVPVNTRHYFTLQEDRKVVAVRIFVTTDGWVP 168          
BLAST of CN188720 vs. ExPASy Swiss-Prot
Match: MTND_BACLD (Acireductone dioxygenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=mtnD PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.602e-14
Identity = 38/107 (35.51%), Postives = 58/107 (54.21%), Query Frame = 2
Query:  242 ELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 562
            E+K I E RGY   D   +  +  P  +E +KNF +EH HTD+E+R+ V+G G F +   +  +  + +  G +I +P    H FTL  D  + A+R+FV    W P
Sbjct:   64 EIKDISERRGYKASDVISLSDQN-PKLDELLKNFKQEHHHTDDEVRFIVSGHGIFAIEGKDGTFFDVLLNPGDLISVPENTRHYFTLQEDRKVVAVRIFVTTEGWVP 169          
BLAST of CN188720 vs. ExPASy Swiss-Prot
Match: MTND_BACA2 (Acireductone dioxygenase OS=Bacillus amyloliquefaciens (strain FZB42) GN=mtnD PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.467e-13
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = 2
Query:  236 DEELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 562
            D E++ I   RGY   D   +  +  PN +E +KNF  EH HTD+E+R+ V+G G F ++  +  +  + +  G +I +P    H FTL  D  + A+R+FV    W P
Sbjct:   62 DTEIQDISARRGYQSQDVISLS-DTTPNLDELLKNFQREHHHTDDEVRFIVSGHGIFVIQGKDGTFFDVRLNPGDLISVPENIRHYFTLQEDRRVVAIRIFVTTEGWVP 169          
BLAST of CN188720 vs. ExPASy Swiss-Prot
Match: MTND_SULSY (Acireductone dioxygenase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=mtnD PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 55/156 (35.26%), Postives = 80/156 (51.28%), Query Frame = 2
Query:  149 KDPKEFVSLDQLSELGVLS--WRLDA------DNYETDEE------------LKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVW 556
            ++P+E  S   LS+ GV+   W +D        NY+ DEE            LK+++E  GY   D   V  EK PN +  +  F  EH H D+E+R+ V GSG F V+  ++  + I V+ G +IV+PAG  H F LD +  IK +R+F     W
Sbjct:   14 ENPEEIKSF--LSQYGVVYDVWGVDRLPEDVRKNYDIDEENSKAIIQAYEKELKELKEKMGYITEDIV-VLSEKTPNLDGLMAKFKREHHHIDDEVRFVVDGSGIFPVKIEDD-IVDIHVEAGELIVVPAGARHWFELDENRKIKCIRVFKTPAGW 165          
BLAST of CN188720 vs. ExPASy Swiss-Prot
Match: MTND_BACP2 (Acireductone dioxygenase OS=Bacillus pumilus (strain SAFR-032) GN=mtnD PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  200 LSWRLDADNYETDE-------ELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 562
            LS + D  + E DE       E++ I E RGY   D   +  +  PN ++ ++NF  EH HTD+E+R+ V+G G F ++  +  +  + +  G +I +P    H FTL  D  + ++R+FV    W P
Sbjct:   43 LSEKYDLTDEEKDEILTVFQKEIESISEKRGYKSQDVISLS-DATPNLDDLLQNFQREHHHTDDEVRFIVSGHGIFAIQGKDGVFFDVRLNPGDLISVPPHIRHYFTLQEDRKVVSVRIFVTTEGWVP 169          
BLAST of CN188720 vs. ExPASy Swiss-Prot
Match: MTND_BACWK (Acireductone dioxygenase OS=Bacillus weihenstephanensis (strain KBAB4) GN=mtnD PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 36/108 (33.33%), Postives = 59/108 (54.63%), Query Frame = 2
Query:  239 EELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 562
            +E+  + E RGY   D   +     PN +E + NF +EH HTD+E+R+ V+G G F +   + ++  + ++ G +I +P    H FTL  D  + A+R+FV    W P
Sbjct:   62 KEIADVSERRGYKAYDVVSLS-NSTPNLDELLINFQKEHHHTDDEVRFIVSGHGIFAIEGKDGRFFDVELEPGDLISVPENARHYFTLQDDRQVVAIRIFVTTEGWVP 168          
BLAST of CN188720 vs. ExPASy Swiss-Prot
Match: MTND_BACCR (Acireductone dioxygenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=mtnD PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.242e-12
Identity = 36/108 (33.33%), Postives = 58/108 (53.70%), Query Frame = 2
Query:  239 EELKKIREDRGYSYMDFCEVCPEKLPNYEEKIKNFFEEHLHTDEEIRYCVAGSGYFDVRDHNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTP 562
            +E+  +   RGY   D   +     PN +E + NF +EH HTD+E+R+ V+G G F +   + K+  + ++ G +I +P    H FTL  D  + A+R+FV    W P
Sbjct:   62 KEIADVSARRGYKAHDVISLS-SSTPNLDELLINFQKEHHHTDDEVRFIVSGHGIFAIEGKDGKFFDVELEPGDLISVPENARHYFTLQDDRQVVAIRIFVTTEGWVP 168          
The following BLAST results are available for this feature:
BLAST of CN188720 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
MTND_DICDI1.321e-3045.071,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
MTND_SCHPO2.332e-2741.621,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
MTND_BACSU3.861e-1429.01Acireductone dioxygenase OS=Bacillus subtilis GN=m... [more]
MTND_EXIS28.602e-1435.51Acireductone dioxygenase OS=Exiguobacterium sibiri... [more]
MTND_BACLD8.602e-1435.51Acireductone dioxygenase OS=Bacillus licheniformis... [more]
MTND_BACA21.467e-1334.86Acireductone dioxygenase OS=Bacillus amyloliquefac... [more]
MTND_SULSY1.916e-1335.26Acireductone dioxygenase OS=Sulfurihydrogenibium s... [more]
MTND_BACP23.269e-1332.03Acireductone dioxygenase OS=Bacillus pumilus (stra... [more]
MTND_BACWK4.269e-1333.33Acireductone dioxygenase OS=Bacillus weihenstephan... [more]
MTND_BACCR1.242e-1233.33Acireductone dioxygenase OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006K08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006K08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188720 ID=CN188720; Name=CN188720; organism=Citrus sinensis; type=EST; length=725bp
AGTCTCAACCTCATTTCTATTGCGTTGCCACCAAGCGTTCGTTCAAAGAA
TTTCAGAAACCATGGTTGCCCCTCAGGATCCTAGAGAGGAAGTTATTCAG
GCATGGTACATGGATGATAGTGATGAAGATCAAAGACTCCCCCATCACAA
GGATCCAAAGGAATTTGTGTCCCTGGACCAGCTTTCTGAACTTGGAGTAC
TCAGCTGGCGATTAGATGCTGATAACTATGAAACTGATGAGGAACTGAAG
AAGATTCGTGAAGATCGCGGATATTCTTACATGGACTTTTGTGAGGTTTG
CCCAGAAAAACTGCCAAATTATGAAGAGAAGATCAAAAACTTTTTCGAAG
AACATCTTCATACAGATGAAGAGATCCGCTACTGTGTGGCAGGAAGTGGT
TACTTTGATGTCAGGGACCATAATGAAAAATGGATTCGCATATGGGTAAA
GAAAGGAGGAATGATTGTTTTACCTGCTGGATGTTACCATCGCTTTACTT
TGGATACAGACAACTATATCAAGGCTATGCGTCTGTTTGTAGGTGATCCC
GTTTGGACTCCATTCAACCGTCCCCATGATCATTTACCCGCAAGGAAGGG
ATATGTTCAAAATTTCTTGCAGAAAGAAGCTGGTGACAGCCCTATCAATG
CTGCTGCGTAATTTGTGCAATTCCTTGCTCATTGGATCAATACTACTGGC
TTTAATAAATAAAGAAACTTCTGTT
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