CN181776

Overview
NameCN181776
Unique NameCN181776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2628 contig Csv1_Contig2628:324..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CAID_SHIFL (Carnitinyl-CoA dehydratase OS=Shigella flexneri GN=caiD PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 4.096e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 279
            GFE+ALA D +V A  A F    A+ GI P  G   +L +I+ P    E+ M    + AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPTIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNS 199          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CAID_SALPB (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.096e-11
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 279
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQSELMDSARELAQQLVNS 199          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CAID_SALG2 (Carnitinyl-CoA dehydratase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.096e-11
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 279
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQSELMDSARELAQQLVNS 199          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CAID_SALEP (Carnitinyl-CoA dehydratase OS=Salmonella enteritidis PT4 (strain P125109) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.096e-11
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 279
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQSELMDSARELAQQLVNS 199          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CAID_SALDC (Carnitinyl-CoA dehydratase OS=Salmonella dublin (strain CT_02021853) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.096e-11
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 279
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQSELMDSARELAQQLVNS 199          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CAID_ECOLI (Carnitinyl-CoA dehydratase OS=Escherichia coli (strain K12) GN=caiD PE=1 SV=4)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 279
            GFE+ALA D +V A  A F    A+ GI P  G   +L +I+ P    E+ M    + AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNS 199          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CAID_ECOLC (Carnitinyl-CoA dehydratase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 279
            GFE+ALA D +V A  A F    A+ GI P  G   +L +I+ P    E+ M    + AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNS 199          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CAID_ECO57 (Carnitinyl-CoA dehydratase OS=Escherichia coli O157:H7 GN=caiD PE=3 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 279
            GFE+ALA D +V A  A F    A+ GI P  G   +L +I+ P    E+ M    + AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNS 199          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CAID_ECOSM (Carnitinyl-CoA dehydratase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=caiD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 279
            GFE+ALA D +V A  A F    A+ GI P  G   +L +I+ P    E+ M    + AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNS 199          
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CAID_ECOL6 (Carnitinyl-CoA dehydratase OS=Escherichia coli O6 GN=caiD PE=3 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 1
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 279
            GFE+ALA D +V A  A F    A+ GI P  G   +L +I+ P    E+ M    + AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNS 199          
The following BLAST results are available for this feature:
BLAST of CN181776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CAID_SHIFL4.096e-1137.36Carnitinyl-CoA dehydratase OS=Shigella flexneri GN... [more]
CAID_SALPB4.096e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALG24.096e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella gallinaru... [more]
CAID_SALEP4.096e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella enteritid... [more]
CAID_SALDC4.096e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella dublin (s... [more]
CAID_ECOLI6.987e-1137.36Carnitinyl-CoA dehydratase OS=Escherichia coli (st... [more]
CAID_ECOLC6.987e-1137.36Carnitinyl-CoA dehydratase OS=Escherichia coli (st... [more]
CAID_ECO576.987e-1137.36Carnitinyl-CoA dehydratase OS=Escherichia coli O15... [more]
CAID_ECOSM9.125e-1137.36Carnitinyl-CoA dehydratase OS=Escherichia coli (st... [more]
CAID_ECOL69.125e-1137.36Carnitinyl-CoA dehydratase OS=Escherichia coli O6 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181776 ID=CN181776; Name=CN181776; organism=Citrus sinensis; type=EST; length=497bp
GAGGCCGGGTTCGAAATCGCGTTGGCTTGTGACGTTTTGGTTGCCGCTAA
AGGCGCAAAATTTATTGACACCCATGCTCGATTTGGGATATTTCCTTCAT
GGGGTCTGTCTCAGAAGCTTTCGCGCATTATTGGACCAAATAGAGCTCGT
GAAGTATCCATGGCAGCTACCCCTATAACTGCTGAGCAAGGTGAGAGGTG
GGGCCTGGTGAACCATGTTGTTGAAGAAGGTGAATTGTTGAAGAAAGCGC
ACGCAGTTGCTGAAGCAATGATAAAGAACAATCAAGACTTGGTGTTGAGG
TATAAGGCAGTCATCAATGATGGTCTGAAGCTGGACTTGGGTCATGCTCT
TGCGCTTGAAAAGGAGCGGGCTCATGACTACTACAATGGAATGACGAAGG
AGCAGTTTAAGAAAATGCAGGAGTTTATAGCTGCTCGGAGTTCAAAGAAA
CCCTCTTCCAAGTTGTAAATTCAACAAATGATCAGCATGTCCTATAC
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