CN181776

Overview
NameCN181776
Unique NameCN181776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2628 contig Csv1_Contig2628:324..820. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181776 vs. ExPASy Swiss-Prot
Match: CAID_ECOL5 (Carnitinyl-CoA dehydratase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=caiD PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:    7 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 279
            GFE+ALA D +V A  A F    A+ GI P  G   +L +I+ P    E+ M    + AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNS 199
The following BLAST results are available for this feature:
BLAST of CN181776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CAID_ECOL59.125e-1137.36Carnitinyl-CoA dehydratase OS=Escherichia coli O6:... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001H10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181776 ID=CN181776; Name=CN181776; organism=Citrus sinensis; type=EST; length=497bp
GAGGCCGGGTTCGAAATCGCGTTGGCTTGTGACGTTTTGGTTGCCGCTAA
AGGCGCAAAATTTATTGACACCCATGCTCGATTTGGGATATTTCCTTCAT
GGGGTCTGTCTCAGAAGCTTTCGCGCATTATTGGACCAAATAGAGCTCGT
GAAGTATCCATGGCAGCTACCCCTATAACTGCTGAGCAAGGTGAGAGGTG
GGGCCTGGTGAACCATGTTGTTGAAGAAGGTGAATTGTTGAAGAAAGCGC
ACGCAGTTGCTGAAGCAATGATAAAGAACAATCAAGACTTGGTGTTGAGG
TATAAGGCAGTCATCAATGATGGTCTGAAGCTGGACTTGGGTCATGCTCT
TGCGCTTGAAAAGGAGCGGGCTCATGACTACTACAATGGAATGACGAAGG
AGCAGTTTAAGAAAATGCAGGAGTTTATAGCTGCTCGGAGTTCAAAGAAA
CCCTCTTCCAAGTTGTAAATTCAACAAATGATCAGCATGTCCTATAC
back to top