CN181775

Overview
NameCN181775
Unique NameCN181775
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2628 contig Csv1_Contig2628:325..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181775 vs. ExPASy Swiss-Prot
Match: AUHM_HUMAN (Methylglutaconyl-CoA hydratase, mitochondrial OS=Homo sapiens GN=AUH PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.024e-11
Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = -3
Query:  157 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGE----LLKKAHAVAEAMIKNNQDLVLRYKAVINDGLKLDLGHALALEK 513
            G E+ALACD+ VAA  AK      +  I P  G +Q+L R IG + A+E+  +A  +  ++ +  GL++HV+E+ +      +KA  +A   +      +   K  IN G+++DL   LA+E+
Sbjct:  187 GLELALACDIRVAASSAKMGLVETKLAIIPGGGGTQRLPRAIGMSLAKELIFSARVLDGKEAKAVGLISHVLEQNQEGDAAYRKALDLAREFLPQGPVAMRVAKLAINQGMEVDLVTGLAIEE 309          
BLAST of CN181775 vs. ExPASy Swiss-Prot
Match: CAID_SALTY (Carnitinyl-CoA dehydratase OS=Salmonella typhimurium GN=caiD PE=3 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = -3
Query:  241 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 513
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL++ A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNS 199          
BLAST of CN181775 vs. ExPASy Swiss-Prot
Match: CAID_SALSV (Carnitinyl-CoA dehydratase OS=Salmonella schwarzengrund (strain CVM19633) GN=caiD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = -3
Query:  241 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 513
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL++ A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNS 199          
BLAST of CN181775 vs. ExPASy Swiss-Prot
Match: CAID_SALNS (Carnitinyl-CoA dehydratase OS=Salmonella newport (strain SL254) GN=caiD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = -3
Query:  241 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 513
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL++ A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNS 199          
BLAST of CN181775 vs. ExPASy Swiss-Prot
Match: CAID_SALHS (Carnitinyl-CoA dehydratase OS=Salmonella heidelberg (strain SL476) GN=caiD PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.643e-11
Identity = 33/91 (36.26%), Postives = 54/91 (59.34%), Query Frame = -3
Query:  241 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 513
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL++ A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNS 199          
BLAST of CN181775 vs. ExPASy Swiss-Prot
Match: CAID_SALPK (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A (strain AKU_12601) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = -3
Query:  241 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 513
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNS 199          
BLAST of CN181775 vs. ExPASy Swiss-Prot
Match: CAID_SALPC (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi C (strain RKS4594) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = -3
Query:  241 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 513
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNS 199          
BLAST of CN181775 vs. ExPASy Swiss-Prot
Match: CAID_SALPA (Carnitinyl-CoA dehydratase OS=Salmonella paratyphi A GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = -3
Query:  241 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 513
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNS 199          
BLAST of CN181775 vs. ExPASy Swiss-Prot
Match: CAID_SALCH (Carnitinyl-CoA dehydratase OS=Salmonella choleraesuis GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = -3
Query:  241 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 513
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNS 199          
BLAST of CN181775 vs. ExPASy Swiss-Prot
Match: CAID_SALA4 (Carnitinyl-CoA dehydratase OS=Salmonella agona (strain SL483) GN=caiD PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.452e-11
Identity = 33/91 (36.26%), Postives = 53/91 (58.24%), Query Frame = -3
Query:  241 GFEIALACDVLVAAKGAKFIDTHARFGIFPSWGLSQKLSRIIGPNRAREVSMAATPITAEQGERWGLVNHVVEEGELLKKAHAVAEAMIKN 513
            GFE+ALA D +V A+ A F    A+ GI P  G   +L +++ P    E+ M    ++AE+  RWG+VN VV + EL+  A  +A+ ++ +
Sbjct:  109 GFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVMTGRRMSAEEALRWGIVNRVVSQSELMDSARELAQQLVNS 199          
The following BLAST results are available for this feature:
BLAST of CN181775 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
AUHM_HUMAN2.024e-1132.52Methylglutaconyl-CoA hydratase, mitochondrial OS=H... [more]
CAID_SALTY2.643e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella typhimuri... [more]
CAID_SALSV2.643e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella schwarzen... [more]
CAID_SALNS2.643e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella newport (... [more]
CAID_SALHS2.643e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella heidelber... [more]
CAID_SALPK3.452e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALPC3.452e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALPA3.452e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella paratyphi... [more]
CAID_SALCH3.452e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella choleraes... [more]
CAID_SALA43.452e-1136.26Carnitinyl-CoA dehydratase OS=Salmonella agona (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181775 ID=CN181775; Name=CN181775; organism=Citrus sinensis; type=EST; length=518bp
TGATTGAATTTGAAAGAGTCGCGTATAGGACATGCTGATCATTTGTTGAA
TTTACAACTTGGAAGAGGGTTTCTTTGAACTCCGAGCAGCTATAAACTCC
TGCATTTTCTTAAACTGCTCCTTCGTCATTCCATTGTAGTAGTCATGAGC
CCGCTCCTTTTCAAGCGCAAGAGCATGACCCAAGTCCAGCTTCAGACCAT
CATTGATGACTGCCTTATACCTCAACACCAAGTCTTGATTGTTCTTTATC
ATTGCTTCAGCAACTGCGTGCGCTTTCTTCAACAATTCACCTTCTTCAAC
AACATGGTTCACCAGGCCCCACCTCTCACCTTGCTCAGCAGTTATAGGGG
TAGCTGCCATGGATACTTCACGAGCTCTATTTGGTCCAATAATGCGCGAA
AGCTTCTGAGACAGACCCCATGAAGGAAATATCCCAAATCGAGCATGGGT
GTCAATAAATTTTGCGCCTTTAGCGGCAACCAAAACGTCACAAGCCAACG
CGATTTCGAACCCGGCCT
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