CN181774

Overview
NameCN181774
Unique NameCN181774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RB11D_TOBAC (Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 43/130 (33.08%), Postives = 71/130 (54.62%), Query Frame = 2
Query:   71 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQ 457
            + Q +DY  FK+V++GD   GK+  + R    EF    + TIGVE            ++   WDTAGQE++  +   YY     A++++D+T R T+ ++P W  +L      NI I+L GNK D+++++
Sbjct:    8 ASQKIDYV-FKVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQR 136          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN 451
            FKLV++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT R T++N   W ++L      NI ++L GNK D+++
Sbjct:   14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRH 132          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB18_RAT (Ras-related protein Rab-18 OS=Rattus norvegicus GN=Rab18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = 2
Query:   95 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVKNRQVKAKQ-VTFHRKKNLQY 505
            + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C    IV  L GNK+D +NR+V   + + F RK ++ +
Sbjct:    8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLF 147          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB18_PONAB (Ras-related protein Rab-18 OS=Pongo abelii GN=RAB18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = 2
Query:   95 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVKNRQVKAKQ-VTFHRKKNLQY 505
            + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C    IV  L GNK+D +NR+V   + + F RK ++ +
Sbjct:    8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLF 147          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB18_MOUSE (Ras-related protein Rab-18 OS=Mus musculus GN=Rab18 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = 2
Query:   95 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVKNRQVKAKQ-VTFHRKKNLQY 505
            + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C    IV  L GNK+D +NR+V   + + F RK ++ +
Sbjct:    8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLF 147          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB18_HUMAN (Ras-related protein Rab-18 OS=Homo sapiens GN=RAB18 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = 2
Query:   95 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVKNRQVKAKQ-VTFHRKKNLQY 505
            + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C    IV  L GNK+D +NR+V   + + F RK ++ +
Sbjct:    8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLF 147          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB18_CHICK (Ras-related protein Rab-18 OS=Gallus gallus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = 2
Query:   95 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVKNRQVKAKQ-VTFHRKKNLQY 505
            + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C    IV  L GNK+D +NR+V   + + F RK ++ +
Sbjct:    8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVKMLVGNKIDKENREVDRNEGLKFARKHSMLF 147          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB18_BOVIN (Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 47/140 (33.57%), Postives = 75/140 (53.57%), Query Frame = 2
Query:   95 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVKNRQVKAKQ-VTFHRKKNLQY 505
            + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C    IV  L GNK+D +NR+V   + + F RK ++ +
Sbjct:    8 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLF 147          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAA1B_ARATH (Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.408e-16
Identity = 42/119 (35.29%), Postives = 69/119 (57.98%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN 451
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT R T++NV  W ++L    + NI ++L GNK D+++
Sbjct:   14 FKVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKVDGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRH 132          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.451e-16
Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ 472
            FK+V++GD G GK+  + R    EF  + + TIGVE            ++   WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L      NI I++ GNK D+K+ +  +++
Sbjct:   13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEE 138          
The following BLAST results are available for this feature:
BLAST of CN181774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB11D_TOBAC3.408e-1633.08Ras-related protein Rab11D OS=Nicotiana tabacum GN... [more]
RB11D_LOTJA3.408e-1635.29Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAB18_RAT3.408e-1633.57Ras-related protein Rab-18 OS=Rattus norvegicus GN... [more]
RAB18_PONAB3.408e-1633.57Ras-related protein Rab-18 OS=Pongo abelii GN=RAB1... [more]
RAB18_MOUSE3.408e-1633.57Ras-related protein Rab-18 OS=Mus musculus GN=Rab1... [more]
RAB18_HUMAN3.408e-1633.57Ras-related protein Rab-18 OS=Homo sapiens GN=RAB1... [more]
RAB18_CHICK3.408e-1633.57Ras-related protein Rab-18 OS=Gallus gallus GN=RAB... [more]
RAB18_BOVIN3.408e-1633.57Ras-related protein Rab-18 OS=Bos taurus GN=RAB18 ... [more]
RAA1B_ARATH3.408e-1635.29Ras-related protein RABA1b OS=Arabidopsis thaliana... [more]
RB2BV_BETVU4.451e-1634.13Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181774 ID=CN181774; Name=CN181774; organism=Citrus sinensis; type=EST; length=507bp
GCTCACTTCTGTGTTCAGACCGCGAACTTCGTATTCTTTCGCACACAGTA
CTCAACTCATGGCTCTGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTC
AAACTCGTCATAGTCGGCGACGGTGGCACTGGGAAGACTACCTTTGTGAA
GAGGCATCTGACTGGGGAGTTTGAGAAGAAGTATGAACCAACTATTGGTG
TGGAGGTTCATCCGTTGGATTTCTTTACAAATTGTGGCAAAATCCGTTTC
TACTGCTGGGACACTGCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGG
TTATTACATCCATGGGCAATGTGCCATCATTATGTTTGATGTTACTGCCC
GATTGACATACAAGAATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTG
TGTGAAAATATACCGATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAA
TAGGCAAGTCAAGGCCAAGCAGGTTACCTTCCACAGGAAGAAGAATCTAC
AGTACTA
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