CN181774

Overview
NameCN181774
Unique NameCN181774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:912..1418. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 42/134 (31.34%), Postives = 72/134 (53.73%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK-NRQV 460
            +KLV+VG GG GK+    + +   F  +Y+PTI            EV  LD             DTAGQE++G +R+ Y   G+  ++++ +T+R +++ + T+H+ + RV   +  P+V+  NK D++  RQV
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCVIDDEVALLDVL-----------DTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQV 133          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAS_LACBI (Ras-like protein OS=Laccaria bicolor PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 38/127 (29.92%), Postives = 71/127 (55.91%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKNRQVKAKQ 472
            +KLV+VG GG GK+    + +   F  +Y+PTI  E +      +         DTAGQE++  +R+ Y   G+  ++++ +T+R +++ + T+ + + RV +    PI++ GNK D+   +V +KQ
Sbjct:    9 YKLVVVGGGGEGKSCLTIQLIQSHFVDEYDPTIE-ESYRKQCVIDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSKQ 134          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAS1_DROPS (Ras-like protein 1 OS=Drosophila pseudoobscura pseudoobscura GN=Ras85D PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 40/127 (31.50%), Postives = 69/127 (54.33%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ 472
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  +++F V +  +++++ T+   + RV   E +P+VL GNK D+    VK +Q
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWNVKNEQ 129          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAS1_DROPE (Ras-like protein 1 OS=Drosophila persimilis GN=Ras85D PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 40/127 (31.50%), Postives = 69/127 (54.33%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ 472
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  +++F V +  +++++ T+   + RV   E +P+VL GNK D+    VK +Q
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNSAKSFEDIGTYREQIKRVKDAEEVPMVLVGNKCDLTTWNVKNEQ 129          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 35/121 (28.93%), Postives = 63/121 (52.07%), Query Frame = 2
Query:  101 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQV 460
            KL+++GD G GK+  + R     F   +  TIG++           +I+   WDTAGQE+F  +   YY      ++++DVT   ++ N+  W R++     +++  +L GNK D+  ++V
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKV 137          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB33_CAEEL (Ras-related protein Rab-33 OS=Caenorhabditis elegans GN=rab-33 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.135e-11
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 2
Query:   59 MALPSQQTVDYP---SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--------NIPIVLCGNKVDVK 448
            MAL    T  Y    +FK++IVG+   GKT    R   G F +  E TIGV+            +R   WDTAGQE++   +   YY +    + ++DVT R ++ ++  W ++    CE         +P +L GNK DV+
Sbjct:   85 MALAPSSTKTYKQKRTFKVIIVGNAAVGKTCLSFRFCCGRFPEHTEATIGVDFRERSCVIENELLRVQLWDTAGQERYRQSIVAHYYRNVNAVVFVYDVTCRESFNDLALWIKE----CEKHGLVGDSEVPRILIGNKCDVE 222          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: YPT10_YEAST (GTP-binding protein YPT10 OS=Saccharomyces cerevisiae GN=YPT10 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.482e-11
Identity = 41/124 (33.06%), Postives = 65/124 (52.42%), Query Frame = 2
Query:   95 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-------VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 445
            + K+V++GD   GKT+ V R  +G+F  K+  TIG       +EV   D  T   +I    WDTAGQE++  L   YY     A+I+F++    + +   TW +DL    +   +++ GNK D+
Sbjct:    4 TIKVVLLGDSSVGKTSIVTRLKSGKFLAKHAATIGAAFITKTIEVPSNDSSTE-KRIHMEIWDTAGQERYKSLVPMYYRDANIALIVFELGDVSSLQCAKTWFQDLQDRAQGTQVIIVGNKYDL 126          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RRAS2_MOUSE (Ras-related protein R-Ras2 OS=Mus musculus GN=Rras2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.482e-11
Identity = 41/128 (32.03%), Postives = 71/128 (55.47%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ 472
            ++LV+VG GG GK+    + +   F   Y+PTI  + +      +    R    DTAGQE+FG +R+ Y   G+  +++F VT R +++ +  + R + RV   +  P++L GNK D+ + RQV  ++
Sbjct:   15 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEE 141          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RRAS2_HUMAN (Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS2 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.482e-11
Identity = 41/128 (32.03%), Postives = 71/128 (55.47%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ 472
            ++LV+VG GG GK+    + +   F   Y+PTI  + +      +    R    DTAGQE+FG +R+ Y   G+  +++F VT R +++ +  + R + RV   +  P++L GNK D+ + RQV  ++
Sbjct:   15 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEE 141          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RHO4_YEAST (GTP-binding protein RHO4 OS=Saccharomyces cerevisiae GN=RHO4 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.482e-11
Identity = 49/149 (32.89%), Postives = 72/149 (48.32%), Query Frame = 2
Query:   20 PRTSYSFAHSTQLMALPS----QQTVDYPSF--KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDV 445
            PR    FA S  L  +PS    ++T   P +  K+V+VGDG  GKT  +  ++ G F   Y PTI           N   I    WDTAGQE++  LR   Y +    ++ + V ++ + KNV   W  ++   C + PI+L G K D+
Sbjct:   43 PRLPTPFARS--LSTIPSYEQMKRTNKLPDYHLKIVVVGDGAVGKTCLLISYVQGTFPTDYIPTIFENYVTNIEGPNGQIIELALWDTAGQEEYSRLRPLSYTNADVLMVCYSVGSKTSLKNVEDLWFPEVKHFCPSTPIMLVGLKSDL 189          
The following BLAST results are available for this feature:
BLAST of CN181774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS_LENED1.135e-1131.34Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]
RAS_LACBI1.135e-1129.92Ras-like protein OS=Laccaria bicolor PE=2 SV=1[more]
RAS1_DROPS1.135e-1131.50Ras-like protein 1 OS=Drosophila pseudoobscura pse... [more]
RAS1_DROPE1.135e-1131.50Ras-like protein 1 OS=Drosophila persimilis GN=Ras... [more]
RAB8A_DICDI1.135e-1128.93Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB33_CAEEL1.135e-1131.69Ras-related protein Rab-33 OS=Caenorhabditis elega... [more]
YPT10_YEAST1.482e-1133.06GTP-binding protein YPT10 OS=Saccharomyces cerevis... [more]
RRAS2_MOUSE1.482e-1132.03Ras-related protein R-Ras2 OS=Mus musculus GN=Rras... [more]
RRAS2_HUMAN1.482e-1132.03Ras-related protein R-Ras2 OS=Homo sapiens GN=RRAS... [more]
RHO4_YEAST1.482e-1132.89GTP-binding protein RHO4 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181774 ID=CN181774; Name=CN181774; organism=Citrus sinensis; type=EST; length=507bp
GCTCACTTCTGTGTTCAGACCGCGAACTTCGTATTCTTTCGCACACAGTA
CTCAACTCATGGCTCTGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTC
AAACTCGTCATAGTCGGCGACGGTGGCACTGGGAAGACTACCTTTGTGAA
GAGGCATCTGACTGGGGAGTTTGAGAAGAAGTATGAACCAACTATTGGTG
TGGAGGTTCATCCGTTGGATTTCTTTACAAATTGTGGCAAAATCCGTTTC
TACTGCTGGGACACTGCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGG
TTATTACATCCATGGGCAATGTGCCATCATTATGTTTGATGTTACTGCCC
GATTGACATACAAGAATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTG
TGTGAAAATATACCGATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAA
TAGGCAAGTCAAGGCCAAGCAGGTTACCTTCCACAGGAAGAAGAATCTAC
AGTACTA
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