CN181774

Overview
NameCN181774
Unique NameCN181774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB9A_MOUSE (Ras-related protein Rab-9A OS=Mus musculus GN=Rab9a PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.132e-19
Identity = 47/141 (33.33%), Postives = 77/141 (54.61%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 505
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK D+K RQV  ++     K N  Y
Sbjct:    8 FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQVSTEEAQAWCKDNGDY 148          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB9A_HUMAN (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.337e-19
Identity = 45/141 (31.91%), Postives = 77/141 (54.61%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 505
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D+  RQV  ++     + N  Y
Sbjct:    8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDY 148          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB9A_CANFA (Ras-related protein Rab-9A OS=Canis familiaris GN=RAB9A PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 7.337e-19
Identity = 45/141 (31.91%), Postives = 77/141 (54.61%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 505
            FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D+  RQV  ++     + N  Y
Sbjct:    8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDY 148          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB9B_PONAB (Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.788e-18
Identity = 46/140 (32.86%), Postives = 77/140 (55.00%), Query Frame = 2
Query:  101 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 505
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+  W ++          E+ P V+ GNKVD ++RQV  ++      +N  Y
Sbjct:    9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQAWCMENGDY 148          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB9B_HUMAN (Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9B PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.788e-18
Identity = 46/140 (32.86%), Postives = 77/140 (55.00%), Query Frame = 2
Query:  101 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 505
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+  W ++          E+ P V+ GNKVD ++RQV  ++      +N  Y
Sbjct:    9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVDKEDRQVTTEEAQTWCMENGDY 148          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RBH1C_ARATH (Ras-related protein RABH1C OS=Arabidopsis thaliana GN=RABH1C PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.211e-18
Identity = 49/128 (38.28%), Postives = 70/128 (54.69%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VKNRQVKAKQ 472
            FKLV +GD   GKT+ + R +  +F+  Y+PTIG++      +     +R   WDTAGQE+F  L   Y      AI+++DV+ R T+ N   W  D+ R     N+ IVL GNK D V+ RQV   +
Sbjct:   10 FKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVEKRQVSISE 137          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB9B_MOUSE (Ras-related protein Rab-9B OS=Mus musculus GN=Rab9b PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.211e-18
Identity = 45/140 (32.14%), Postives = 77/140 (55.00%), Query Frame = 2
Query:  101 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY 505
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE+F  LR  +Y    C ++ F V  R +++N+  W ++          ++ P V+ GNKVD ++RQV  ++      +N  Y
Sbjct:    9 KVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPDHFPFVVLGNKVDKEDRQVTTEEAQAWCMENGNY 148          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB23_HUMAN (Ras-related protein Rab-23 OS=Homo sapiens GN=RAB23 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.060e-17
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 2
Query:   95 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD------VKNRQVKA 466
            + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQE+F  +   YY   Q  +++F  T R +++ V +W   +     +IP VL  NK+D      +KN + +A
Sbjct:    9 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAVSSWREKVVAEVGDIPTVLVQNKIDLLDDSCIKNEEAEA 138          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RACC_ENTHI (Rho-related protein racC OS=Entamoeba histolytica GN=RACC PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.384e-17
Identity = 48/129 (37.21%), Postives = 71/129 (55.04%), Query Frame = 2
Query:   95 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT 478
            S KLV+VGDG  GKT  +  + T EF K Y PT+  + + +       +I+   WDTAGQE++  LR   Y      +I F VT+ ++Y NV T WH ++      +PI+L G K+D +N     K++T
Sbjct:    7 SIKLVVVGDGAVGKTCLLICYTTNEFPKDYIPTV-FDNYVVSLTAGTRQIQLALWDTAGQEEYDQLRPLSYSSASIFLICFSVTSSVSYDNVITKWHPEVIHFAPKVPIILVGTKLDTRNDPAIVKRLT 134          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB7A_DICDI (Ras-related protein Rab-7A OS=Dictyostelium discoideum GN=rab7A PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.360e-17
Identity = 39/129 (30.23%), Postives = 74/129 (57.36%), Query Frame = 2
Query:  101 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVDVKNRQVKAKQ 472
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++ +DV    T++N+ +W  +       R  +N P V+ GNK+D++N++V +++
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKELMVDDRVVTMQIWDTAGQERFQSLGVAFYRGADCCVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLENQRVVSQK 138          
The following BLAST results are available for this feature:
BLAST of CN181774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB9A_MOUSE1.132e-1933.33Ras-related protein Rab-9A OS=Mus musculus GN=Rab9... [more]
RAB9A_HUMAN7.337e-1931.91Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]
RAB9A_CANFA7.337e-1931.91Ras-related protein Rab-9A OS=Canis familiaris GN=... [more]
RAB9B_PONAB2.788e-1832.86Ras-related protein Rab-9B OS=Pongo abelii GN=RAB9... [more]
RAB9B_HUMAN2.788e-1832.86Ras-related protein Rab-9B OS=Homo sapiens GN=RAB9... [more]
RBH1C_ARATH6.211e-1838.28Ras-related protein RABH1C OS=Arabidopsis thaliana... [more]
RAB9B_MOUSE6.211e-1832.14Ras-related protein Rab-9B OS=Mus musculus GN=Rab9... [more]
RAB23_HUMAN1.060e-1733.85Ras-related protein Rab-23 OS=Homo sapiens GN=RAB2... [more]
RACC_ENTHI1.384e-1737.21Rho-related protein racC OS=Entamoeba histolytica ... [more]
RAB7A_DICDI2.360e-1730.23Ras-related protein Rab-7A OS=Dictyostelium discoi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181774 ID=CN181774; Name=CN181774; organism=Citrus sinensis; type=EST; length=507bp
GCTCACTTCTGTGTTCAGACCGCGAACTTCGTATTCTTTCGCACACAGTA
CTCAACTCATGGCTCTGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTC
AAACTCGTCATAGTCGGCGACGGTGGCACTGGGAAGACTACCTTTGTGAA
GAGGCATCTGACTGGGGAGTTTGAGAAGAAGTATGAACCAACTATTGGTG
TGGAGGTTCATCCGTTGGATTTCTTTACAAATTGTGGCAAAATCCGTTTC
TACTGCTGGGACACTGCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGG
TTATTACATCCATGGGCAATGTGCCATCATTATGTTTGATGTTACTGCCC
GATTGACATACAAGAATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTG
TGTGAAAATATACCGATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAA
TAGGCAAGTCAAGGCCAAGCAGGTTACCTTCCACAGGAAGAAGAATCTAC
AGTACTA
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