CN181774

Overview
NameCN181774
Unique NameCN181774
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.868e-17
Identity = 44/122 (36.07%), Postives = 70/122 (57.38%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV 460
            FKL+++GD G GK+  + R     + + +  TIGV+        N   I+   WDTAGQE+F  +   YY      I+++DVT +LT++NV  W +++ R  CEN+  +L GNK D+  ++V
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDLVAKKV 130          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RB11C_TOBAC (Ras-related protein Rab11C OS=Nicotiana tabacum GN=RAB11C PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.969e-17
Identity = 44/130 (33.85%), Postives = 71/130 (54.62%), Query Frame = 2
Query:   71 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQ 457
            + Q +DY  FK+V++GD   GKT  + R    EF    + TIGVE            ++   WDTAGQE++  +   YY     A++++D+T R T+ ++P W  +L      NI I+L GNK D+++++
Sbjct:    8 ASQKIDYV-FKVVLIGDSAVGKTQILARFARNEFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLTGNKTDLEDQR 136          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RAB23_MOUSE (Ras-related protein Rab-23 OS=Mus musculus GN=Rab23 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 8.969e-17
Identity = 39/117 (33.33%), Postives = 65/117 (55.56%), Query Frame = 2
Query:   95 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 445
            + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQE+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  NK+D+
Sbjct:    9 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDL 125          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.171e-16
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN 496
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +     +KN
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN 146          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.171e-16
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN 496
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +     +KN
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN 146          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.171e-16
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN 496
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +     +KN
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN 146          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.171e-16
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN 496
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +     +KN
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN 146          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.171e-16
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN 496
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +     +KN
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN 146          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 1.171e-16
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN 496
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +     +KN
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN 146          
BLAST of CN181774 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.171e-16
Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 2
Query:   98 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN 496
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ R V   +     +KN
Sbjct:   12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN 146          
The following BLAST results are available for this feature:
BLAST of CN181774 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1A_DICDI6.868e-1736.07Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RB11C_TOBAC8.969e-1733.85Ras-related protein Rab11C OS=Nicotiana tabacum GN... [more]
RAB23_MOUSE8.969e-1733.33Ras-related protein Rab-23 OS=Mus musculus GN=Rab2... [more]
RB11A_RAT1.171e-1634.81Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT1.171e-1634.81Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB1.171e-1634.81Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG1.171e-1634.81Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE1.171e-1634.81Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN1.171e-1634.81Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK1.171e-1634.81Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181774 ID=CN181774; Name=CN181774; organism=Citrus sinensis; type=EST; length=507bp
GCTCACTTCTGTGTTCAGACCGCGAACTTCGTATTCTTTCGCACACAGTA
CTCAACTCATGGCTCTGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTC
AAACTCGTCATAGTCGGCGACGGTGGCACTGGGAAGACTACCTTTGTGAA
GAGGCATCTGACTGGGGAGTTTGAGAAGAAGTATGAACCAACTATTGGTG
TGGAGGTTCATCCGTTGGATTTCTTTACAAATTGTGGCAAAATCCGTTTC
TACTGCTGGGACACTGCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGG
TTATTACATCCATGGGCAATGTGCCATCATTATGTTTGATGTTACTGCCC
GATTGACATACAAGAATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTG
TGTGAAAATATACCGATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAA
TAGGCAAGTCAAGGCCAAGCAGGTTACCTTCCACAGGAAGAAGAATCTAC
AGTACTA
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