CN181766

Overview
NameCN181766
Unique NameCN181766
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:25..573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_CHLAD (Phosphoglycerate kinase OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pgk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.308e-29
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 251
            WNGPMGVFE + FAAGT AIA+ +AE S  G  TI+GGGDSVAAVE+ GLA+KM+H+STGGGASLELLEG+ LPGV AL DA
Sbjct:  318 WNGPMGVFELEPFAAGTRAIAQAMAEASANGAITIVGGGDSVAAVEQAGLAEKMAHVSTGGGASLELLEGRVLPGVAALQDA 399          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_CHLAA (Phosphoglycerate kinase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pgk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.308e-29
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 251
            WNGPMGVFE + FA GT AIA+ +AE +  G  TI+GGGDSVAAVE+ GLADKMSH+STGGGASLELLEG+ LPGV AL DA
Sbjct:  318 WNGPMGVFELEPFAVGTRAIAQAMAEAAANGAITIVGGGDSVAAVEQAGLADKMSHVSTGGGASLELLEGRVLPGVAALQDA 399          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_PROM5 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9515) GN=pgk PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.216e-28
Identity = 65/82 (79.27%), Postives = 70/82 (85.37%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 248
            WNGPMGVFEFDKFA GT +IA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV AL++
Sbjct:  320 WNGPMGVFEFDKFAEGTNSIATTLADLSSFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKNLPGVAALNE 401          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_PELPB (Phosphoglycerate kinase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.029e-27
Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 248
            WNGPMGVFE D FAAGT A+A+ +AE + +G TTIIGGGDS AAV K GLA++M+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  317 WNGPMGVFEIDNFAAGTMAVAQAMAEATAEGATTIIGGGDSAAAVAKAGLANEMTHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_PELLD (Phosphoglycerate kinase OS=Pelodictyon luteolum (strain DSM 273) GN=pgk PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.756e-27
Identity = 59/80 (73.75%), Postives = 65/80 (81.25%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 245
            WNGPMGVFE D FA GT A+A+ LA  + KG TTIIGGGDS AAV K GLADKM+HISTGGGASLE LEGK LPG+ AL+
Sbjct:  317 WNGPMGVFEIDNFAGGTIAVAEALAAATAKGATTIIGGGDSAAAVAKAGLADKMTHISTGGGASLEFLEGKELPGIAALN 396          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_TRIEI (Phosphoglycerate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pgk PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.293e-27
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 248
            WNGPMGVFE +KFA GTEAIA+ LA+   +   TIIGGGDSVAAVE++GL +KMSHISTGGGASLELLEGK LPG++ALDD
Sbjct:  319 WNGPMGVFEMEKFAKGTEAIAQTLADK--QDAITIIGGGDSVAAVEQLGLGEKMSHISTGGGASLELLEGKKLPGIVALDD 397          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_CHLL2 (Phosphoglycerate kinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=pgk PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.671e-27
Identity = 57/81 (70.37%), Postives = 67/81 (82.72%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 248
            WNGPMGVFE D+FA GT AIA+ +A+ +  G TTIIGGGDS AAV K GLAD+++HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  317 WNGPMGVFEIDRFAEGTIAIAEAMADATAAGATTIIGGGDSAAAVAKAGLADQITHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_PROVI (Phosphoglycerate kinase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=pgk PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.712e-27
Identity = 58/81 (71.60%), Postives = 65/81 (80.25%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 248
            WNGPMGVFE D FA GT A+A+ +A  + KG TTIIGGGDS AAV K GLA KM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  317 WNGPMGVFEIDSFANGTFAVAEAMALATAKGATTIIGGGDSAAAVAKAGLASKMTHISTGGGASLEFLEGKELPGIAALND 397          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_HERA2 (Phosphoglycerate kinase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=pgk PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.486e-26
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 248
            WNGPMGVFE + FAAGT A+A+ LA+ S     TIIGGGDSVAA+E++GLA+KMSHISTGGGASLELLEGK LPG+ AL+D
Sbjct:  316 WNGPMGVFELEPFAAGTRAVAQALADSSA---ITIIGGGDSVAAIEQMGLAEKMSHISTGGGASLELLEGKVLPGIAALND 393          
BLAST of CN181766 vs. ExPASy Swiss-Prot
Match: PGK_CHLTE (Phosphoglycerate kinase OS=Chlorobium tepidum GN=pgk PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.535e-26
Identity = 54/81 (66.67%), Postives = 67/81 (82.72%), Query Frame = 3
Query:    6 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 248
            WNGPMGVFE D+FA GT A+A+ LA+ + +G  TIIGGGDS AA+ K GL+DK++H+STGGGASLE LEGK LPG+ AL+D
Sbjct:  317 WNGPMGVFEIDQFARGTFAVAQALADATAEGAITIIGGGDSAAAIAKAGLSDKVTHVSTGGGASLEFLEGKELPGIAALND 397          
The following BLAST results are available for this feature:
BLAST of CN181766 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CHLAD9.308e-2973.17Phosphoglycerate kinase OS=Chloroflexus aggregans ... [more]
PGK_CHLAA9.308e-2973.17Phosphoglycerate kinase OS=Chloroflexus aurantiacu... [more]
PGK_PROM51.216e-2879.27Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PELPB1.029e-2771.60Phosphoglycerate kinase OS=Pelodictyon phaeoclathr... [more]
PGK_PELLD1.756e-2773.75Phosphoglycerate kinase OS=Pelodictyon luteolum (s... [more]
PGK_TRIEI2.293e-2775.31Phosphoglycerate kinase OS=Trichodesmium erythraeu... [more]
PGK_CHLL26.671e-2770.37Phosphoglycerate kinase OS=Chlorobium limicola (st... [more]
PGK_PROVI8.712e-2771.60Phosphoglycerate kinase OS=Prosthecochloris vibrio... [more]
PGK_HERA21.486e-2672.84Phosphoglycerate kinase OS=Herpetosiphon aurantiac... [more]
PGK_CHLTE2.535e-2666.67Phosphoglycerate kinase OS=Chlorobium tepidum GN=p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H05_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181766 ID=CN181766; Name=CN181766; organism=Citrus sinensis; type=EST; length=549bp
GAGGCTGGAATGGACCTATGGGTGTGTTTGAATTTGATAAATTTGCTGCT
GGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCAGCGGGAAGGGAGT
GACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCCGTAGAGAAGGTTG
GTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGGTGGAGCCAGCTTA
GAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTGCTCTTGATGATGC
TTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTGCCATTTCCAGAGT
TGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAAAGTTAAACTTTAT
CATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAAATAAATTCTTTCT
CACAGGCATCAATGGTGATGCATTTTTCTGGATTTGATCCCATTTTGGAA
CATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAAGTTCTTGTTCCTT
TCTGATCACAATGAGCCGTTGATGATTGTTAGATAATGCATGAATCCTG
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