CN181765

Overview
NameCN181765
Unique NameCN181765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:32..572. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_CLONN (Phosphoglycerate kinase OS=Clostridium novyi (strain NT) GN=pgk PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 55/81 (67.90%), Postives = 63/81 (77.78%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFEF  FA GT A+A+ +AE      TTIIGGGDS AAV ++G  DKM+HISTGGGASLE LEGK LPG++AL D
Sbjct:  320 WNGPMGVFEFANFAKGTIAVAEAMAEADA---TTIIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIVALSD 397          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_CHLT3 (Phosphoglycerate kinase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=pgk PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.013e-24
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGPMGVFE +KFA GT A+A+ LA+ + +G  T+IGGGDS AA+   GL D ++H+STGGGASLE LEGK LPG+ AL +A
Sbjct:  316 WNGPMGVFEMEKFAKGTMAVAQALADATKQGAITVIGGGDSAAAIAVAGLEDSVTHVSTGGGASLEFLEGKELPGIAALSNA 397          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_RHOSR (Phosphoglycerate kinase OS=Rhodococcus sp. (strain RHA1) GN=pgk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  298 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 537
            WNGPMGVFEF+KFAAGT+ +A+ + E +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  322 WNGPMGVFEFEKFAAGTKGVAEAIIEATGKGAYSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_RHOOB (Phosphoglycerate kinase OS=Rhodococcus opacus (strain B4) GN=pgk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  298 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGL-ADKMSHISTGGGASLELLEGKTLPGVLALD 537
            WNGPMGVFEF+KFAAGT+ +A+ + E +GKG  +++GGGDS AAV ++GL  D  SHISTGGGASLE LEGK LPG+  L+
Sbjct:  322 WNGPMGVFEFEKFAAGTKGVAEAIIEATGKGAYSVVGGGDSAAAVRQLGLPEDGFSHISTGGGASLEYLEGKELPGIAVLE 402          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_LEPIN (Phosphoglycerate kinase OS=Leptospira interrogans GN=pgk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 53/79 (67.09%), Postives = 65/79 (82.28%), Query Frame = -2
Query:  301 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 537
            WNGPMGVFE DKFA+GT AIAK +A+   K   T++GGGDS+AA+ K G+ADK++HISTGGGASLE +EG+ LPGV AL
Sbjct:  315 WNGPMGVFEMDKFASGTMAIAKAVAKSKAK---TVVGGGDSIAAINKAGVADKITHISTGGGASLEFMEGRKLPGVEAL 390          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_BACHK (Phosphoglycerate kinase OS=Bacillus thuringiensis subsp. konkukian GN=pgk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE   F+ GT+A+ + LA+   +G  ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  315 WNGPMGVFEMTPFSQGTKAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_BACCQ (Phosphoglycerate kinase OS=Bacillus cereus (strain Q1) GN=pgk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE   F+ GT+A+ + LA+   +G  ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  315 WNGPMGVFEMTPFSQGTKAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_BACC7 (Phosphoglycerate kinase OS=Bacillus cereus (strain AH187) GN=pgk PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.935e-24
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE   F+ GT+A+ + LA+   +G  ++IGGGDS AAVEK G+ADKMSHISTGGGASLE +EGK LPGV+ L+D
Sbjct:  315 WNGPMGVFEMTPFSQGTKAVGQALAD--AEGTYSVIGGGDSAAAVEKFGMADKMSHISTGGGASLEFMEGKELPGVVCLND 393          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_LEUMM (Phosphoglycerate kinase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=pgk PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.139e-24
Identity = 50/81 (61.73%), Postives = 66/81 (81.48%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE   FA GT AI ++L +++  G TTI+GGGDS AAV+++G+ADK++HISTGGGASLE LEGK LPG+ ++ +
Sbjct:  324 WNGPMGVFEMSNFAKGTLAIGEELVKVTENGGTTIVGGGDSTAAVQQLGVADKLTHISTGGGASLEYLEGKELPGIASISE 404          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_OENOB (Phosphoglycerate kinase OS=Oenococcus oeni (strain BAA-331 / PSU-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.712e-24
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE   FA GT  + K +  L+ +G  TI+GGGDS AAV ++G+AD+ +HISTGGGASLE LEGKTLPG+ A+ D
Sbjct:  323 WNGPMGVFEMSNFANGTLELGKFIGSLTSEGAATIVGGGDSTAAVSQLGIADQFTHISTGGGASLEYLEGKTLPGIAAISD 403          
The following BLAST results are available for this feature:
BLAST of CN181765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_CLONN3.013e-2467.90Phosphoglycerate kinase OS=Clostridium novyi (stra... [more]
PGK_CHLT33.013e-2462.20Phosphoglycerate kinase OS=Chloroherpeton thalassi... [more]
PGK_RHOSR3.935e-2464.20Phosphoglycerate kinase OS=Rhodococcus sp. (strain... [more]
PGK_RHOOB3.935e-2464.20Phosphoglycerate kinase OS=Rhodococcus opacus (str... [more]
PGK_LEPIN3.935e-2467.09Phosphoglycerate kinase OS=Leptospira interrogans ... [more]
PGK_BACHK3.935e-2465.43Phosphoglycerate kinase OS=Bacillus thuringiensis ... [more]
PGK_BACCQ3.935e-2465.43Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_BACC73.935e-2465.43Phosphoglycerate kinase OS=Bacillus cereus (strain... [more]
PGK_LEUMM5.139e-2461.73Phosphoglycerate kinase OS=Leuconostoc mesenteroid... [more]
PGK_OENOB6.712e-2461.73Phosphoglycerate kinase OS=Oenococcus oeni (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181765 ID=CN181765; Name=CN181765; organism=Citrus sinensis; type=EST; length=541bp
ATTCTGATTATCTAACATCATCAACGGCTCATTGTGATCAGAAAGGAACT
AGAACTTGACTTCAGGAAACTTATAGCCTTACCATCACAATGTTCCAAAA
TGGGATCAAATCCAGAAAAATGCATCACCATTGATGCCTGTGAGAAAGAA
TTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGATAAAGTT
TAACTTTTATCCACTCTGGGCTGACAACCAGCCACACATACAACTCTGGA
AATGGCACATTTAAAAAAGGAAAGTCCAGGAACTGGGTTTAAGCATCATC
AAGAGCAAGCACACCAGGGAGTGTTTTGCCCTCAAGGAGCTCTAAGCTGG
CTCCACCTCCAGTGGAGATATGGCTCATCTTGTCAGCCAGACCAACCTTC
TCTACGGCTGCAACTGAGTCACCTCCTCCAATGATTGTGGTCACTCCCTT
CCCGCTGAGCTCCGCAAGCTTCTTGGCAATTGCCTCAGTGCCAGCAGCAA
ATTTATCAAATTCAAACACACCCATAGGTCCATTCCAGCCT
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