CN181765

Overview
NameCN181765
Unique NameCN181765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:32..572. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_LEPIC (Phosphoglycerate kinase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=pgk PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.331e-23
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = -2
Query:  301 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 537
            WNGPMGVFE DKFA+GT AIAK +A+   K   T++GGGDS+AA+ K  +ADK++HISTGGGASLE +EG+ LPGV AL
Sbjct:  315 WNGPMGVFEMDKFASGTMAIAKAVAKSKAK---TVVGGGDSIAAINKARVADKITHISTGGGASLEFMEGRKLPGVEAL 390          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_YEAST (Phosphoglycerate kinase OS=Saccharomyces cerevisiae GN=PGK1 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 4.350e-23
Identity = 50/81 (61.73%), Postives = 62/81 (76.54%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP GVFEF+KFAAGT+A+  ++ + S  G T IIGGGD+    +K G+ DK+SH+STGGGASLELLEGK LPGV  L +
Sbjct:  334 WNGPPGVFEFEKFAAGTKALLDEVVKSSAAGNTVIIGGGDTATVAKKYGVTDKISHVSTGGGASLELLEGKELPGVAFLSE 414          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_GLOVI (Phosphoglycerate kinase OS=Gloeobacter violaceus GN=pgk PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.350e-23
Identity = 53/82 (64.63%), Postives = 62/82 (75.61%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGPMGVFE   F+ GT A+A  LAE       +I+GGGDS +A EK G+ DK+SH+STGGGASLE LEGKTLPGV ALD+A
Sbjct:  329 WNGPMGVFELPGFSKGTFAVAHALAESDN---LSIVGGGDSASAAEKAGVVDKLSHVSTGGGASLEFLEGKTLPGVAALDEA 407          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_DEIGD (Phosphoglycerate kinase OS=Deinococcus geothermalis (strain DSM 11300) GN=pgk PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.350e-23
Identity = 53/79 (67.09%), Postives = 64/79 (81.01%), Query Frame = -2
Query:  301 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 537
            WNGPMGVFEF  FAAGT A+A+ +AEL G    T++GGGDSV+A+ + G A K+SHISTGGGASLELLEG+ LPGV A+
Sbjct:  311 WNGPMGVFEFPAFAAGTNAVAQAVAEL-GNQAYTVVGGGDSVSAINQSGQASKVSHISTGGGASLELLEGQLLPGVEAM 388          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_YARLI (Phosphoglycerate kinase OS=Yarrowia lipolytica GN=PGK1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.682e-23
Identity = 50/81 (61.73%), Postives = 58/81 (71.60%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP GVFEFD FA GT+A+     +    G T IIGGGD+    +K G  DK+SH+STGGGASLELLEGKTLPGV AL +
Sbjct:  335 WNGPPGVFEFDNFAKGTKAVLDACVKAVDNGATVIIGGGDTATVAKKYGAEDKLSHVSTGGGASLELLEGKTLPGVAALSE 415          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_CORK4 (Phosphoglycerate kinase OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=pgk PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 5.682e-23
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = -2
Query:  298 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLALD 537
            WNGP+GVFEF+ FA GT+ +A+ +AE +  G  ++IGGGDS +AV  +G AD+  SHISTGGGASLEL+EGKTLPGV  LD
Sbjct:  322 WNGPVGVFEFEAFANGTKGLAEAIAEATKNGAFSVIGGGDSASAVRNLGFADEAFSHISTGGGASLELIEGKTLPGVAVLD 402          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_NEUCR (Phosphoglycerate kinase OS=Neurospora crassa GN=pgk-1 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 50/81 (61.73%), Postives = 60/81 (74.07%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP GVFEFDKFA GT+A      + + +G T IIGGGD+     K G+ DK+SH+STGGGASLELLEGK LPGV+AL +
Sbjct:  336 WNGPAGVFEFDKFAKGTKATLDACVKAAEEGRTVIIGGGDTATVAAKYGVEDKLSHVSTGGGASLELLEGKALPGVVALSE 416          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_LEPBJ (Phosphoglycerate kinase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=pgk PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 51/79 (64.56%), Postives = 63/79 (79.75%), Query Frame = -2
Query:  301 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 537
            WNGPMGVFE DKFA GT AIAK +++   K   T++GGGDS+AA+ K  +ADK++HISTGGGASLE +EG+ LPGV AL
Sbjct:  315 WNGPMGVFEMDKFAGGTMAIAKAISKSKAK---TVVGGGDSIAAINKAKVADKITHISTGGGASLEFMEGRKLPGVEAL 390          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_CAEEL (Probable phosphoglycerate kinase OS=Caenorhabditis elegans GN=pgk-1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.420e-23
Identity = 50/82 (60.98%), Postives = 61/82 (74.39%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGP GVFEFDKFA GT+++  ++ + +  G  TIIGGGD+  A +K    DK+SH+STGGGASLELLEGK LPGV AL  A
Sbjct:  335 WNGPAGVFEFDKFATGTKSLMDEVVKATAAGAITIIGGGDTATAAKKYNTEDKVSHVSTGGGASLELLEGKVLPGVDALSPA 416          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_PORGI (Phosphoglycerate kinase OS=Porphyromonas gingivalis GN=pgk PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 9.691e-23
Identity = 46/79 (58.23%), Postives = 62/79 (78.48%), Query Frame = -2
Query:  301 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 537
            WNGP GVFEFD F+ G++A+ + + E +  G  +++GGGDSVA V K GLADK+S++STGGGA LE +EGKTLPG+ A+
Sbjct:  338 WNGPTGVFEFDNFSIGSKAVGEAIVEATANGAFSLVGGGDSVACVNKFGLADKVSYVSTGGGALLEAIEGKTLPGIAAI 416          
The following BLAST results are available for this feature:
BLAST of CN181765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_LEPIC3.331e-2365.82Phosphoglycerate kinase OS=Leptospira interrogans ... [more]
PGK_YEAST4.350e-2361.73Phosphoglycerate kinase OS=Saccharomyces cerevisia... [more]
PGK_GLOVI4.350e-2364.63Phosphoglycerate kinase OS=Gloeobacter violaceus G... [more]
PGK_DEIGD4.350e-2367.09Phosphoglycerate kinase OS=Deinococcus geothermali... [more]
PGK_YARLI5.682e-2361.73Phosphoglycerate kinase OS=Yarrowia lipolytica GN=... [more]
PGK_CORK45.682e-2362.96Phosphoglycerate kinase OS=Corynebacterium kroppen... [more]
PGK_NEUCR7.420e-2361.73Phosphoglycerate kinase OS=Neurospora crassa GN=pg... [more]
PGK_LEPBJ7.420e-2364.56Phosphoglycerate kinase OS=Leptospira borgpetersen... [more]
PGK_CAEEL7.420e-2360.98Probable phosphoglycerate kinase OS=Caenorhabditis... [more]
PGK_PORGI9.691e-2358.23Phosphoglycerate kinase OS=Porphyromonas gingivali... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181765 ID=CN181765; Name=CN181765; organism=Citrus sinensis; type=EST; length=541bp
ATTCTGATTATCTAACATCATCAACGGCTCATTGTGATCAGAAAGGAACT
AGAACTTGACTTCAGGAAACTTATAGCCTTACCATCACAATGTTCCAAAA
TGGGATCAAATCCAGAAAAATGCATCACCATTGATGCCTGTGAGAAAGAA
TTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGATAAAGTT
TAACTTTTATCCACTCTGGGCTGACAACCAGCCACACATACAACTCTGGA
AATGGCACATTTAAAAAAGGAAAGTCCAGGAACTGGGTTTAAGCATCATC
AAGAGCAAGCACACCAGGGAGTGTTTTGCCCTCAAGGAGCTCTAAGCTGG
CTCCACCTCCAGTGGAGATATGGCTCATCTTGTCAGCCAGACCAACCTTC
TCTACGGCTGCAACTGAGTCACCTCCTCCAATGATTGTGGTCACTCCCTT
CCCGCTGAGCTCCGCAAGCTTCTTGGCAATTGCCTCAGTGCCAGCAGCAA
ATTTATCAAATTCAAACACACCCATAGGTCCATTCCAGCCT
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