CN181765

Overview
NameCN181765
Unique NameCN181765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:32..572. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_PROM4 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9211) GN=pgk PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.948e-31
Identity = 68/81 (83.95%), Postives = 71/81 (87.65%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFEFDKFA GT +IA  L+ LS KG  TIIGGGDSVAAVEK GLADKMSHISTGGGASLELLEGKTLPGV ALD+
Sbjct:  320 WNGPMGVFEFDKFANGTNSIATTLSVLSQKGCCTIIGGGDSVAAVEKAGLADKMSHISTGGGASLELLEGKTLPGVAALDE 400          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_ACAM1 (Phosphoglycerate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=pgk PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.948e-31
Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGPMGVFEFDKFAAGT+A+A  LA ++  G  TIIGGGDSVAAVEKVG+A+KMSHISTGGGASLELLEGK LPG+ ALD+A
Sbjct:  320 WNGPMGVFEFDKFAAGTDAVAHSLAAITETGADTIIGGGDSVAAVEKVGVAEKMSHISTGGGASLELLEGKVLPGIAALDEA 401          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_PROM1 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain NATL1A) GN=pgk PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.323e-31
Identity = 68/82 (82.93%), Postives = 70/82 (85.37%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGPMGVFEF+KFA GT AIA  LAELS +G  TIIGGGDSVAAVEK GLA  MSHISTGGGASLELLEGK LPGV ALDDA
Sbjct:  320 WNGPMGVFEFEKFANGTNAIANTLAELSAQGCCTIIGGGDSVAAVEKAGLAKNMSHISTGGGASLELLEGKVLPGVSALDDA 401          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_PROM2 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9215) GN=pgk PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.649e-30
Identity = 69/83 (83.13%), Postives = 72/83 (86.75%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  320 WNGPMGVFEFDKFAEGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_PROMS (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain AS9601) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.154e-30
Identity = 69/83 (83.13%), Postives = 72/83 (86.75%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  320 WNGPMGVFEFDKFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_PROM9 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9312) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.154e-30
Identity = 69/83 (83.13%), Postives = 72/83 (86.75%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL+DA
Sbjct:  320 WNGPMGVFEFDKFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALNDA 402          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_PROMP (Phosphoglycerate kinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=pgk PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.813e-30
Identity = 69/83 (83.13%), Postives = 71/83 (85.54%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGKTLPGV AL DA
Sbjct:  320 WNGPMGVFEFDKFAEGTNAIATTLADLSSFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKTLPGVAALKDA 402          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGKH_VOLCA (Phosphoglycerate kinase, chloroplastic OS=Volvox carteri GN=PGK PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.185e-30
Identity = 64/81 (79.01%), Postives = 70/81 (86.42%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFEF KFA GT AIA  L+EL+ KG  TIIGGGDSVAAVE+ G+A+KMSHISTGGGASLELLEGK LPGV ALD+
Sbjct:  381 WNGPMGVFEFPKFAVGTVAIANTLSELTPKGAITIIGGGDSVAAVEQAGVAEKMSHISTGGGASLELLEGKVLPGVAALDE 461          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_PROM0 (Phosphoglycerate kinase OS=Prochlorococcus marinus (strain MIT 9301) GN=pgk PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.069e-29
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSG-KGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGPMGVFEFDKFA GT AIA  LA+LS    V TIIGGGDSVAAVEK GLA+KMSHISTGGGASLELLEGK LPGV AL+DA
Sbjct:  320 WNGPMGVFEFDKFADGTNAIATTLADLSAFSEVCTIIGGGDSVAAVEKAGLAEKMSHISTGGGASLELLEGKILPGVAALNDA 402          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_CHLSY (Phosphoglycerate kinase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pgk PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 9.050e-29
Identity = 60/82 (73.17%), Postives = 68/82 (82.93%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGPMGVFE + FA GT AIA+ +AE +  G  TI+GGGDSVAAVE+ GLADKMSH+STGGGASLELLEG+ LPGV AL DA
Sbjct:  318 WNGPMGVFELEPFAVGTRAIAQAMAEAAANGAITIVGGGDSVAAVEQAGLADKMSHVSTGGGASLELLEGRVLPGVAALQDA 399          
The following BLAST results are available for this feature:
BLAST of CN181765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_PROM41.948e-3183.95Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_ACAM11.948e-3179.27Phosphoglycerate kinase OS=Acaryochloris marina (s... [more]
PGK_PROM13.323e-3182.93Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM21.649e-3083.13Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROMS2.154e-3083.13Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROM92.154e-3083.13Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_PROMP2.813e-3083.13Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGKH_VOLCA8.185e-3079.01Phosphoglycerate kinase, chloroplastic OS=Volvox c... [more]
PGK_PROM01.069e-2981.93Phosphoglycerate kinase OS=Prochlorococcus marinus... [more]
PGK_CHLSY9.050e-2973.17Phosphoglycerate kinase OS=Chloroflexus aurantiacu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181765 ID=CN181765; Name=CN181765; organism=Citrus sinensis; type=EST; length=541bp
ATTCTGATTATCTAACATCATCAACGGCTCATTGTGATCAGAAAGGAACT
AGAACTTGACTTCAGGAAACTTATAGCCTTACCATCACAATGTTCCAAAA
TGGGATCAAATCCAGAAAAATGCATCACCATTGATGCCTGTGAGAAAGAA
TTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGATAAAGTT
TAACTTTTATCCACTCTGGGCTGACAACCAGCCACACATACAACTCTGGA
AATGGCACATTTAAAAAAGGAAAGTCCAGGAACTGGGTTTAAGCATCATC
AAGAGCAAGCACACCAGGGAGTGTTTTGCCCTCAAGGAGCTCTAAGCTGG
CTCCACCTCCAGTGGAGATATGGCTCATCTTGTCAGCCAGACCAACCTTC
TCTACGGCTGCAACTGAGTCACCTCCTCCAATGATTGTGGTCACTCCCTT
CCCGCTGAGCTCCGCAAGCTTCTTGGCAATTGCCTCAGTGCCAGCAGCAA
ATTTATCAAATTCAAACACACCCATAGGTCCATTCCAGCCT
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