CN181765

Overview
NameCN181765
Unique NameCN181765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:32..572. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_SALAR (Phosphoglycerate kinase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  306 WNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_SALA4 (Phosphoglycerate kinase OS=Salmonella agona (strain SL483) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  306 WNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_PSEF5 (Phosphoglycerate kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 42/80 (52.50%), Postives = 60/80 (75.00%), Query Frame = -2
Query:  298 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 537
            WNGP+GVFEFD+F  GT+ +A+ +A+       +I GGGD++AA++K G+A ++S+ISTGGGA LE +EGK LP V  L+
Sbjct:  306 WNGPVGVFEFDQFGNGTKVLAQAIAD---SAAFSIAGGGDTLAAIDKYGVAQQISYISTGGGAFLEFVEGKVLPAVEVLE 382          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_PROMH (Phosphoglycerate kinase OS=Proteus mirabilis (strain HI4320) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP+GVFEF  F  GTE IAK +A+       +I GGGD++AA++   +ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  306 WNGPVGVFEFPNFRKGTEVIAKAIAD---SDAFSIAGGGDTLAAIDLFDIADKISYISTGGGAFLEFVEGKKLPAVAMLEE 383          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_FRATN (Phosphoglycerate kinase OS=Francisella tularensis subsp. novicida (strain U112) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 42/81 (51.85%), Postives = 59/81 (72.84%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP+GVFEFD FA GT+A++  +A+       ++ GGGD++AA+EK G+ D++S+IST GGA LE LEGK LP +  L +
Sbjct:  311 WNGPVGVFEFDNFAEGTKALSLSIAQ---SHAFSVAGGGDTIAAIEKFGIKDQVSYISTAGGAFLEFLEGKKLPAIEILKE 388          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_ECOLI (Phosphoglycerate kinase OS=Escherichia coli (strain K12) GN=pgk PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  306 WNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_ECOLC (Phosphoglycerate kinase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  306 WNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_ECOL6 (Phosphoglycerate kinase OS=Escherichia coli O6 GN=pgk PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  306 WNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_ECOL5 (Phosphoglycerate kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  306 WNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_ECOK1 (Phosphoglycerate kinase OS=Escherichia coli O1:K1 / APEC GN=pgk PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 43/81 (53.09%), Postives = 58/81 (71.60%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  306 WNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
The following BLAST results are available for this feature:
BLAST of CN181765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_SALAR7.187e-1853.09Phosphoglycerate kinase OS=Salmonella arizonae (st... [more]
PGK_SALA47.187e-1853.09Phosphoglycerate kinase OS=Salmonella agona (strai... [more]
PGK_PSEF57.187e-1852.50Phosphoglycerate kinase OS=Pseudomonas fluorescens... [more]
PGK_PROMH7.187e-1854.32Phosphoglycerate kinase OS=Proteus mirabilis (stra... [more]
PGK_FRATN7.187e-1851.85Phosphoglycerate kinase OS=Francisella tularensis ... [more]
PGK_ECOLI7.187e-1853.09Phosphoglycerate kinase OS=Escherichia coli (strai... [more]
PGK_ECOLC7.187e-1853.09Phosphoglycerate kinase OS=Escherichia coli (strai... [more]
PGK_ECOL67.187e-1853.09Phosphoglycerate kinase OS=Escherichia coli O6 GN=... [more]
PGK_ECOL57.187e-1853.09Phosphoglycerate kinase OS=Escherichia coli O6:K15... [more]
PGK_ECOK17.187e-1853.09Phosphoglycerate kinase OS=Escherichia coli O1:K1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181765 ID=CN181765; Name=CN181765; organism=Citrus sinensis; type=EST; length=541bp
ATTCTGATTATCTAACATCATCAACGGCTCATTGTGATCAGAAAGGAACT
AGAACTTGACTTCAGGAAACTTATAGCCTTACCATCACAATGTTCCAAAA
TGGGATCAAATCCAGAAAAATGCATCACCATTGATGCCTGTGAGAAAGAA
TTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGATAAAGTT
TAACTTTTATCCACTCTGGGCTGACAACCAGCCACACATACAACTCTGGA
AATGGCACATTTAAAAAAGGAAAGTCCAGGAACTGGGTTTAAGCATCATC
AAGAGCAAGCACACCAGGGAGTGTTTTGCCCTCAAGGAGCTCTAAGCTGG
CTCCACCTCCAGTGGAGATATGGCTCATCTTGTCAGCCAGACCAACCTTC
TCTACGGCTGCAACTGAGTCACCTCCTCCAATGATTGTGGTCACTCCCTT
CCCGCTGAGCTCCGCAAGCTTCTTGGCAATTGCCTCAGTGCCAGCAGCAA
ATTTATCAAATTCAAACACACCCATAGGTCCATTCCAGCCT
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