CN181765

Overview
NameCN181765
Unique NameCN181765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2633 contig Csv1_Contig2633:32..572. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_BACST (Phosphoglycerate kinase OS=Bacillus stearothermophilus GN=pgk PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 2.725e-25
Identity = 58/81 (71.60%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE D FA GT+AIA+ LAE       ++IGGGDS AAVEK GLADKM HISTGGGASLE +EGK LPGV+AL+D
Sbjct:  315 WNGPMGVFEMDAFAHGTKAIAEALAE--ALDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_BACME (Phosphoglycerate kinase OS=Bacillus megaterium GN=pgk PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.648e-25
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE D FA GT+A+A+ LAE +     ++IGGGDS AAVEK  LADKMSHISTGGGASLE +EGK LPGV+AL+D
Sbjct:  315 WNGPMGVFELDAFANGTKAVAEALAEATD--TYSVIGGGDSAAAVEKFNLADKMSHISTGGGASLEFMEGKELPGVVALND 393          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_ROSS1 (Phosphoglycerate kinase OS=Roseiflexus sp. (strain RS-1) GN=pgk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.070e-25
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGPMGVFE   FA GT AIA+ +A   G    TI+GGGDSVAAVE++GLADK+ HISTGGGASLELLEG+ LPGV AL+DA
Sbjct:  317 WNGPMGVFELAPFAEGTRAIAQAMANCPGM---TIVGGGDSVAAVEQMGLADKIRHISTGGGASLELLEGRILPGVAALNDA 395          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_ROSCS (Phosphoglycerate kinase OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=pgk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.070e-25
Identity = 58/82 (70.73%), Postives = 66/82 (80.49%), Query Frame = -2
Query:  292 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA 537
            WNGPMGVFE   FA GT AIA+ +A   G    TIIGGGDSVAA+E++GLADK+ HISTGGGASLELLEG+ LPGV AL+DA
Sbjct:  317 WNGPMGVFELAPFAEGTRAIAQAMANCPGM---TIIGGGDSVAAIEQMGLADKIRHISTGGGASLELLEGRILPGVAALNDA 395          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_GEOKA (Phosphoglycerate kinase OS=Geobacillus kaustophilus GN=pgk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.070e-25
Identity = 57/81 (70.37%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE + FA GT+AIA+ LAE       ++IGGGDS AAVEK GLADKM HISTGGGASLE +EGK LPGV+AL+D
Sbjct:  315 WNGPMGVFEMEAFAHGTKAIAEALAE--APDTYSVIGGGDSAAAVEKFGLADKMDHISTGGGASLEFMEGKQLPGVVALED 393          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_CLOTE (Phosphoglycerate kinase OS=Clostridium tetani GN=pgk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.070e-25
Identity = 56/81 (69.14%), Postives = 64/81 (79.01%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFEF+KFA GT  +AK +AE      TTIIGGGDS AAV ++G  DKM+HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  323 WNGPMGVFEFEKFAKGTIEVAKAMAESQA---TTIIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIAALND 400          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_CLOAB (Phosphoglycerate kinase OS=Clostridium acetobutylicum GN=pgk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.070e-25
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFEF+ FA GT+ +AK +AE      TT+IGGGDS AAV ++G  DKM+HISTGGGASLE LEGK LPG++AL+D
Sbjct:  319 WNGPMGVFEFENFAKGTKDVAKAMAE---SDATTVIGGGDSAAAVNQLGFGDKMTHISTGGGASLEFLEGKELPGIVALND 396          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_BREBN (Phosphoglycerate kinase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=pgk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.070e-25
Identity = 57/81 (70.37%), Postives = 64/81 (79.01%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE D FA GT  +AK +A  SG   TTIIGGGDSVAAVEK G+A++M+HISTGGGASLE +EGK LPGV  L D
Sbjct:  315 WNGPMGVFEMDAFAGGTIGVAKAMAACSG---TTIIGGGDSVAAVEKAGVAEQMTHISTGGGASLEFMEGKELPGVAVLAD 392          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_ACIBL (Phosphoglycerate kinase OS=Acidobacteria bacterium (strain Ellin345) GN=pgk PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.070e-25
Identity = 57/79 (72.15%), Postives = 63/79 (79.75%), Query Frame = -2
Query:  301 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 537
            WNGPMGVFEFD FA GT AIAK +A     G T+I+GGGDSVAAV   G+ADK++HISTGGGASLE LEGK LPGV AL
Sbjct:  324 WNGPMGVFEFDNFAKGTRAIAKAVA--GNSGATSIVGGGDSVAAVHDAGVADKITHISTGGGASLEFLEGKKLPGVEAL 400          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_THESQ (Phosphoglycerate kinase OS=Thermotoga sp. (strain RQ2) GN=pgk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.928e-25
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE D FA GT+ +A  +A L+ KG  T++GGGDS AAV K GL DK SH+STGGGASLE LEGK LPG+ ++ D
Sbjct:  316 WNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASIAD 396          
The following BLAST results are available for this feature:
BLAST of CN181765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_BACST2.725e-2571.60Phosphoglycerate kinase OS=Bacillus stearothermoph... [more]
PGK_BACME4.648e-2570.37Phosphoglycerate kinase OS=Bacillus megaterium GN=... [more]
PGK_ROSS16.070e-2570.73Phosphoglycerate kinase OS=Roseiflexus sp. (strain... [more]
PGK_ROSCS6.070e-2570.73Phosphoglycerate kinase OS=Roseiflexus castenholzi... [more]
PGK_GEOKA6.070e-2570.37Phosphoglycerate kinase OS=Geobacillus kaustophilu... [more]
PGK_CLOTE6.070e-2569.14Phosphoglycerate kinase OS=Clostridium tetani GN=p... [more]
PGK_CLOAB6.070e-2566.67Phosphoglycerate kinase OS=Clostridium acetobutyli... [more]
PGK_BREBN6.070e-2570.37Phosphoglycerate kinase OS=Brevibacillus brevis (s... [more]
PGK_ACIBL6.070e-2572.15Phosphoglycerate kinase OS=Acidobacteria bacterium... [more]
PGK_THESQ7.928e-2564.20Phosphoglycerate kinase OS=Thermotoga sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181765 ID=CN181765; Name=CN181765; organism=Citrus sinensis; type=EST; length=541bp
ATTCTGATTATCTAACATCATCAACGGCTCATTGTGATCAGAAAGGAACT
AGAACTTGACTTCAGGAAACTTATAGCCTTACCATCACAATGTTCCAAAA
TGGGATCAAATCCAGAAAAATGCATCACCATTGATGCCTGTGAGAAAGAA
TTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGATAAAGTT
TAACTTTTATCCACTCTGGGCTGACAACCAGCCACACATACAACTCTGGA
AATGGCACATTTAAAAAAGGAAAGTCCAGGAACTGGGTTTAAGCATCATC
AAGAGCAAGCACACCAGGGAGTGTTTTGCCCTCAAGGAGCTCTAAGCTGG
CTCCACCTCCAGTGGAGATATGGCTCATCTTGTCAGCCAGACCAACCTTC
TCTACGGCTGCAACTGAGTCACCTCCTCCAATGATTGTGGTCACTCCCTT
CCCGCTGAGCTCCGCAAGCTTCTTGGCAATTGCCTCAGTGCCAGCAGCAA
ATTTATCAAATTCAAACACACCCATAGGTCCATTCCAGCCT
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