CN181765

Overview
NameCN181765
Unique NameCN181765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_BACSK (Phosphoglycerate kinase OS=Bacillus clausii (strain KSM-K16) GN=pgk PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.928e-25
Identity = 56/81 (69.14%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE + FA GT+A+A  LAE S     ++IGGGDS AAVE+ GLADKMSHISTGGGASLE +EGK LPGV+AL +
Sbjct:  315 WNGPMGVFELESFAGGTKAVANALAEASD--TYSVIGGGDSAAAVEQFGLADKMSHISTGGGASLEFMEGKELPGVVALSE 393          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 113.235 bits (282), Expect = 7.928e-25
Identity = 52/81 (64.20%), Postives = 62/81 (76.54%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE D FA GT+ +A  +A L+ KG  T++GGGDS AAV K GL DK SH+STGGGASLE LEGK LPG+ ++ D
Sbjct:  316 WNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDKFSHVSTGGGASLEFLEGKELPGIASIAD 396          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_TREPS (Phosphoglycerate kinase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=pgk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = -2
Query:  298 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 537
            WNGP+GVFEFD FA GT  +A+ +AE +  G T+++GGGDS+AAV K GLA +MSH+STGGGASL+L EGK LPG+  L+
Sbjct:  339 WNGPVGVFEFDAFAHGTRVLAQLIAEATDAGATSVVGGGDSIAAVSKFGLASRMSHVSTGGGASLKLFEGKVLPGISCLE 418          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_TREPA (Phosphoglycerate kinase OS=Treponema pallidum GN=pgk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 50/80 (62.50%), Postives = 64/80 (80.00%), Query Frame = -2
Query:  298 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 537
            WNGP+GVFEFD FA GT  +A+ +AE +  G T+++GGGDS+AAV K GLA +MSH+STGGGASL+L EGK LPG+  L+
Sbjct:  339 WNGPVGVFEFDAFAHGTRVLAQLIAEATDAGATSVVGGGDSIAAVSKFGLASRMSHVSTGGGASLKLFEGKVLPGISCLE 418          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_THETN (Phosphoglycerate kinase OS=Thermoanaerobacter tengcongensis GN=pgk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 55/81 (67.90%), Postives = 66/81 (81.48%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE  +FA GT+AIAK L+E  G   TTI+GGGDS AA+E++G ADK++HISTGGGASLE LEGK LPG+  L+D
Sbjct:  316 WNGPMGVFEIPEFAKGTKAIAKALSECKG---TTIVGGGDSAAAIEQLGYADKVTHISTGGGASLEFLEGKVLPGIDILND 393          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_FERNB (Phosphoglycerate kinase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=pgk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 51/81 (62.96%), Postives = 65/81 (80.25%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGP+GVFE + FA GT+A+A+ +A L+ KGVTT++GGGDS AAV + GL  K SH+STGGGASLE LEGK LPG+ ++ D
Sbjct:  316 WNGPLGVFEIEDFANGTKAVAEFIASLTDKGVTTVVGGGDSAAAVSQFGLEKKFSHVSTGGGASLEFLEGKELPGIASIAD 396          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_CLOD6 (Phosphoglycerate kinase OS=Clostridium difficile (strain 630) GN=pgk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 53/81 (65.43%), Postives = 66/81 (81.48%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFEF+ FA GT ++A+ +AEL+    TT+IGGGDS AAV ++G  DKM+H+STGGGASLE LEGK LPG+ ALD+
Sbjct:  321 WNGPMGVFEFENFANGTLSVARAMAELTD--ATTVIGGGDSAAAVNQLGFGDKMTHVSTGGGASLEFLEGKELPGIAALDN 399          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_BACHD (Phosphoglycerate kinase OS=Bacillus halodurans GN=pgk PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.035e-24
Identity = 55/81 (67.90%), Postives = 67/81 (82.72%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE D FA GT+A+A+ LA+ +     ++IGGGDS AAVEK GLA++MSHISTGGGASLE +EGK LPGV+AL+D
Sbjct:  315 WNGPMGVFELDAFAGGTKAVAEALADAND--TYSVIGGGDSAAAVEKFGLANQMSHISTGGGASLEFMEGKALPGVVALND 393          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_CHLPB (Phosphoglycerate kinase OS=Chlorobium phaeobacteroides (strain BS1) GN=pgk PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.352e-24
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE + FA GT AIA+ LA+ + KG  +I+GGGDS AAV K GLA  ++HISTGGGASLE LEGK LPG+ AL+D
Sbjct:  317 WNGPMGVFEIEPFAKGTIAIAQALADATAKGTISIVGGGDSAAAVMKAGLASGITHISTGGGASLEFLEGKELPGITALND 397          
BLAST of CN181765 vs. ExPASy Swiss-Prot
Match: PGK_THEP1 (Phosphoglycerate kinase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=pgk PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.766e-24
Identity = 51/81 (62.96%), Postives = 62/81 (76.54%), Query Frame = -2
Query:  295 WNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 537
            WNGPMGVFE D FA GT+ +A  +A L+ KG  T++GGGDS AAV K GL D+ SH+STGGGASLE LEGK LPG+ ++ D
Sbjct:  316 WNGPMGVFEIDDFAEGTKQVALAIAALTEKGAITVVGGGDSAAAVNKFGLEDRFSHVSTGGGASLEFLEGKELPGIASIAD 396          
The following BLAST results are available for this feature:
BLAST of CN181765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_BACSK7.928e-2569.14Phosphoglycerate kinase OS=Bacillus clausii (strai... [more]
PGKT_THEMA7.928e-2564.20Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
PGK_TREPS1.035e-2462.50Phosphoglycerate kinase OS=Treponema pallidum subs... [more]
PGK_TREPA1.035e-2462.50Phosphoglycerate kinase OS=Treponema pallidum GN=p... [more]
PGK_THETN1.035e-2467.90Phosphoglycerate kinase OS=Thermoanaerobacter teng... [more]
PGK_FERNB1.035e-2462.96Phosphoglycerate kinase OS=Fervidobacterium nodosu... [more]
PGK_CLOD61.035e-2465.43Phosphoglycerate kinase OS=Clostridium difficile (... [more]
PGK_BACHD1.035e-2467.90Phosphoglycerate kinase OS=Bacillus halodurans GN=... [more]
PGK_CHLPB1.352e-2466.67Phosphoglycerate kinase OS=Chlorobium phaeobactero... [more]
PGK_THEP11.766e-2462.96Phosphoglycerate kinase OS=Thermotoga petrophila (... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001H05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181765 ID=CN181765; Name=CN181765; organism=Citrus sinensis; type=EST; length=541bp
ATTCTGATTATCTAACATCATCAACGGCTCATTGTGATCAGAAAGGAACT
AGAACTTGACTTCAGGAAACTTATAGCCTTACCATCACAATGTTCCAAAA
TGGGATCAAATCCAGAAAAATGCATCACCATTGATGCCTGTGAGAAAGAA
TTTATTTTTACTCTTACAGCATCTACAAAACCAACTCTAATGATAAAGTT
TAACTTTTATCCACTCTGGGCTGACAACCAGCCACACATACAACTCTGGA
AATGGCACATTTAAAAAAGGAAAGTCCAGGAACTGGGTTTAAGCATCATC
AAGAGCAAGCACACCAGGGAGTGTTTTGCCCTCAAGGAGCTCTAAGCTGG
CTCCACCTCCAGTGGAGATATGGCTCATCTTGTCAGCCAGACCAACCTTC
TCTACGGCTGCAACTGAGTCACCTCCTCCAATGATTGTGGTCACTCCCTT
CCCGCTGAGCTCCGCAAGCTTCTTGGCAATTGCCTCAGTGCCAGCAGCAA
ATTTATCAAATTCAAACACACCCATAGGTCCATTCCAGCCT
back to top