CN181764

Overview
NameCN181764
Unique NameCN181764
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11791 contig Csv1_Contig11791:10..606. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 191.43 bits (485), Expect = 2.835e-48
Identity = 100/201 (49.75%), Postives = 126/201 (62.69%), Query Frame = 2
Query:   11 MALW-VILCVGFLSLVSSVQGYGG----WINAHATFYXXXXXXXXXXXXXX-YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGG-WCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTIDGHSYFNLVLITNVGGAGDVRAVSLKGSRTRWQPMSRNWGQNW 592
            MA W + +     + V++  G  G    W +A A +Y               YG+L   GYG  TAALSTALFN+G SCGAC++IMC+ +PQ CL GSI +TAT+ CPPG  WC  PN HFDLS P+F  IAQ +A +VPV YRRV C + GG++F + G+     +L  NVGGAGD+ AVS KGS+T W  MSR WGQNW
Sbjct:   17 MATWFMFISYSHGANVAAAPGTNGLDTAWYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNW 217          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXP13_ARATH (Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 5.347e-47
Identity = 90/180 (50.00%), Postives = 111/180 (61.67%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTIDGHSYFNLVLITNVGGAGDVRAVSLKGSRTRWQPMSRNWGQNW 592
            W  A AT+Y              YG+L   GYG  T  LS  LF  G  CGACF++ C +D +WC+ G SII+TATNFC P        GG C+PPN HF L    F+ IA ++AG +PV YRR+ C++ G +RFT+DG   F  VLITNV G+GD+ AV +KGSRT W PM RNWGQNW
Sbjct:   40 WRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLFERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGGHCNPPNKHFVLPIEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIKGSRTGWLPMGRNWGQNW 219          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.527e-46
Identity = 87/175 (49.71%), Postives = 115/175 (65.71%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC--ANDPQWCLRG-SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTIDGHSYFNLVLITNVGGAGDVRAVSLKGSRTRWQPMSRNWGQNWQ 595
            W+   ATFY              YGNLY Q YG N AALST LFN+G SCG C+ I+C     P WC  G +I VT TN+   GGWC+    +FD+SQP +++I  Y AGIVP++Y++V+C R GG+RF I+G +YF LVL+TN+ G+G + ++S+KGS T W  M+RNWG NWQ
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY---GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQ 194          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.721e-46
Identity = 93/185 (50.27%), Postives = 112/185 (60.54%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP----------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTIDGHSYFNLVLITNVGGAGDVRAVSLK-GSRTRWQPMSRNWGQNWQ 595
            W  AHATFY              YGNLY+ GYGT+TAALST LF +G  CG C+Q+ C      C RGS  I VTATN CPP          GGWC+PP  HFDLS+P F  +A +RAGIVPV+YRRV C R GG+RF + G+ Y+ L  + NV GAGDV  + +K G    W  MS NWG ++Q
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQ 220          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 6.536e-45
Identity = 87/180 (48.33%), Postives = 116/180 (64.44%), Query Frame = 2
Query:   80 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTIDGHSYFNLVLITNVGGAGDVRAVSLKGSRTRWQPMSRNWGQNW 592
            W +A A++Y              +G+L   GYG  T  LSTALF  G +CG C+++ C +D ++CL G SI+VTATNFC P        GG C+PPNHHF L    F+ IA ++AG++P+ YRRV C R+GG+RF + G S+F  VLI+NVGGAGDVR+V +KG+ + W  M RNWGQ W
Sbjct:   33 WRSAKASYYAADPEDAIGGACG-FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIW 211          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.118e-43
Identity = 84/159 (52.83%), Postives = 105/159 (66.04%), Query Frame = 2
Query:  149 YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTIDGHSYFNLVLITNVGGAGDVRAVSLKGSRTRWQPMSRNWGQNWQ 595
            YG+L    YG  TA +S ALF  G +CG C+++ C N   WCLRGS  ++VTAT+FC P        GGWC+ P  HF++S+  F  +A+ +A IVPV +RRV C R GG+RFTI G + F  VLITNV   G+V AV +KGSRT W PM RNWGQNWQ
Sbjct:   57 YGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQ 215          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.154e-41
Identity = 79/158 (50.00%), Postives = 104/158 (65.82%), Query Frame = 2
Query:  149 YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTIDGHSYFNLVLITNVGGAGDVRAVSLKGSRTRWQPMSRNWGQNW 592
            YG+L    +   +A LS  LFN G SCGAC ++ C N  +WCL+GS  ++VTAT+FCPP        GGWC+ P  H +LS   F  IA+ RA ++P+ YRRV+C R GG+RF++ G S+F  VLI+NVG  G+V  V +KG  T W PM+RNWGQNW
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNW 210          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.320e-37
Identity = 75/153 (49.02%), Postives = 98/153 (64.05%), Query Frame = 2
Query:  173 YGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTIDGHSYFNLVLITNVGGAGDVRAVSLK--GSRTRWQPMSRNWGQNWQ 595
            Y T TAALST LF +G  CG C+++ C   P WC  GS  +++T TN CPP        GGWC+PP HHFD++ P F  +AQ  AGIVPV YRRV C+R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K  G    W   + NWG  +Q
Sbjct:   85 YSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQ 236          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.366e-34
Identity = 76/179 (42.46%), Postives = 108/179 (60.34%), Query Frame = 2
Query:   74 GGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPN----HHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTIDGHSYFNLVLITNVGGAGDVRAVSLKGS-RTRWQPMSRNWGQNWQ 595
            G W++ HATFY               G   + GYG  TAA+S ALF+NG  CGAC+++   +        +++VTATN  PP     P N     HFDL+ P F  IA+ + G+VPV YR+V C R GGI++TI G+  +N+V++ NVGGAGDV  +++KG+ R +W P+ R+WGQ W+
Sbjct:   80 GPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPP-----PVNGMKGEHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWK 246          
BLAST of CN181764 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.162e-17
Identity = 67/214 (31.31%), Postives = 98/214 (45.79%), Query Frame = 2
Query:   11 MALWVILCVGFLSLVSSVQGY---GGWINAHATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG-GIRFTIDGHS--YFNLVLITNVGGAGDVRAVSL-----KGSRTRWQPMSRNWGQNWQ 595
            +A   + C    S V+SV  +    GW    AT+Y              Y G++    + +  AA S +++ +G  CG+C+Q+ C+ +P  C    + V  T+ C PGG C     HFDLS   F  +A+         AG +PV Y RV CK  G  I F +D  S  Y+  VL+ +  G GD+ AV L      G    W  M ++WG  W+
Sbjct:   12 VAFVALACCVLRSSVASVDHHRKLSGWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLC-PGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWK 223          
The following BLAST results are available for this feature:
BLAST of CN181764 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 80
Match NameE-valueIdentityDescription
EXP21_ARATH2.835e-4849.75Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP13_ARATH5.347e-4750.00Expansin-A13 OS=Arabidopsis thaliana GN=EXPA13 PE=... [more]
EXP20_ORYSJ4.527e-4649.71Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP30_ORYSJ7.721e-4650.27Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP10_ORYSJ6.536e-4548.33Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ6.118e-4352.83Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH1.154e-4150.00Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP17_ORYSJ1.320e-3749.02Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP26_ORYSJ1.366e-3442.46Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ1.162e-1731.31Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H04_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181764 ID=CN181764; Name=CN181764; organism=Citrus sinensis; type=EST; length=597bp
GAGGAAAAAAATGGCTCTTTGGGTGATTCTTTGTGTTGGGTTTCTCTCAT
TGGTCTCATCCGTTCAAGGTTATGGAGGTTGGATTAATGCTCATGCAACT
TTCTATGGAGGTGGTGATGCTTCTGGCACAATGGGGGGCGCTTGTGGGTA
CGGCAATTTGTACAGCCAAGGTTATGGTACTAATACCGCAGCACTTAGCA
CTGCTTTGTTCAACAATGGCCTAAGTTGTGGAGCTTGCTTTCAAATTATG
TGCGCTAATGACCCGCAATGGTGCCTGCGTGGCTCCATCATTGTCACTGC
CACTAACTTTTGCCCTCCTGGAGGCTGGTGTGATCCTCCTAACCACCACT
TTGATCTCTCTCAGCCTGTCTTCCAACACATTGCCCAGTATAGAGCTGGT
ATTGTTCCTGTAATCTACAGAAGGGTGAGATGCAAGAGAAATGGGGGCAT
AAGGTTCACAATCGATGGCCATTCTTACTTCAATTTAGTTCTAATAACAA
ACGTGGGTGGAGCTGGTGACGTGCGTGCTGTATCCCTCAAAGGTTCAAGG
ACTAGATGGCAACCGATGTCCAGAAACTGGGGCCAAAACTGGCAAAG
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