CN181762 | Citrus Genome Database

Overview


Name	CN181762
Unique Name	CN181762
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	502

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1_RAT (Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Adh1 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 2.200e-19
Identity = 34/79 (43.04%), Postives = 46/79 (58.23%), Query Frame = -2

Query:  265 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLIRELQTAD 501
            +PIQEV+ EMT+GGVD S E  G +D M SA    H   GV+V+VGVP         P+++L  RT KG +    ++ D
Sbjct:  250 KPIQEVLQEMTDGGVDFSFEVIGRLDTMTSALLSCHSACGVSVIVGVPPSAQSLSVNPMSLLLGRTWKGAIFGGFKSKD 328

HSP 2 Score: 48.521 bits (114), Expect = 2.200e-19
Identity = 20/55 (36.36%), Postives = 36/55 (65.45%), Query Frame = -3

Query:  123 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 287
            FG +K +  +P +V  +M K+  LE  ITH +PF +IN+AF+ +  G+ +R +++
Sbjct:  321 FGGFKSKDAVPKLVADFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVLT 375

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH4_STRCA (Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH4 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.861e-19
Identity = 33/70 (47.14%), Postives = 45/70 (64.29%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +P+QE+IAEMTNGGVD ++EC GN D M +AFE    GWG  V+VGV   +      P+ ++  R +K T
Sbjct:  253 KPVQEIIAEMTNGGVDFAIECIGNPDVMKAAFESTTVGWGTCVIVGVAVGEQSIPFSPMQLIMGRKIKAT 322

HSP 2 Score: 44.2838 bits (103), Expect = 2.861e-19
Identity = 19/54 (35.19%), Postives = 32/54 (59.26%), Query Frame = -3

Query:  126 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 287
            FG +K    +P +V  YM K+ +L+  ++H +P  +IN AF+ M  G+  R I+
Sbjct:  324 FGGWKSVKSVPKLVSDYMAKKFDLDALVSHTLPLDKINDAFDLMNAGKSNRTIL 377

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADHL5_ARATH (Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.718e-19
Identity = 30/56 (53.57%), Postives = 42/56 (75.00%), Query Frame = -3

Query:  120 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 287
            FG  KP+ D+P +VD Y+ K+L L+ FITH + F EINKAF+ +V+G+ LRCI+ M
Sbjct:  332 FGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINKAFDLLVQGKSLRCILWM 387

HSP 2 Score: 42.743 bits (99), Expect = 3.718e-19
Identity = 26/74 (35.14%), Postives = 35/74 (47.30%), Query Frame = -2

Query:  274 IQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLIRELQ 495
            I EVI EMT GGVD S EC G    +  AF     G G  V++G+            ++L  R + G+L   L+
Sbjct:  263 ISEVIKEMTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHLTPVSLGSFDLLRGRHVCGSLFGGLK 336

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADHL2_ARATH (Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.837e-19
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = -3

Query:  117 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 287
            FG  KP+ D+P +VD Y+ K+L LE  ITH + F EINKAF  + +G  +RCII M+
Sbjct:  329 FGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEINKAFHLLAEGNSIRCIIWMD 385

HSP 2 Score: 45.4394 bits (106), Expect = 4.837e-19
Identity = 27/76 (35.53%), Postives = 38/76 (50.00%), Query Frame = -2

Query:  274 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLIRELQ 501
            + I EVI EMT+ G D S EC G    M  AF+    G G  +++G+  K         ++L  RT+ GTL   L+
Sbjct:  258 KTISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQKALPISLGSYDLLRGRTVCGTLFGGLK 333

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: FRMA_HAEIN (S-(hydroxymethyl)glutathione dehydrogenase OS=Haemophilus influenzae GN=frmA PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 8.182e-19
Identity = 23/70 (32.86%), Postives = 41/70 (58.57%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +PI++V+ ++   G+D + EC GN++ M  A E  H GWG ++++GV        T+P  ++  R  KG+
Sbjct:  252 KPIKDVLLDINKWGIDHTFECIGNVNVMRQALESAHRGWGQSIIIGVAGAGQEISTRPFQLVTGRVWKGS 321

HSP 2 Score: 53.9138 bits (128), Expect = 8.182e-19
Identity = 23/54 (42.59%), Postives = 37/54 (68.52%), Query Frame = -3

Query:  126 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 287
            FG  K R++LP +V+  M   ++LE F+TH +P  +IN+AFE M +G+ +R +I
Sbjct:  323 FGGVKGRSELPQMVEDSMKGDIQLEPFVTHTMPLDKINEAFELMHEGKSIRTVI 376

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1_PERMA (Alcohol dehydrogenase 1 OS=Peromyscus maniculatus GN=ADH1 PE=2 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 8.183e-19
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = -2

Query:  265 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLIRELQTAD 501
            +PIQEV+ EMT+GGVD S E  G +D M S+    H   GV+V+VGVP         P+++L  R+ KG +    ++ D
Sbjct:  249 KPIQEVLQEMTDGGVDFSFEVIGRLDTMTSSLLSCHASCGVSVIVGVPPNAQSLSVNPMSLLMGRSWKGAIFGGFKSKD 327

HSP 2 Score: 49.6766 bits (117), Expect = 8.183e-19
Identity = 20/55 (36.36%), Postives = 36/55 (65.45%), Query Frame = -3

Query:  123 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 287
            FG +K +  +P +V  +M K+  LE  ITH +PF +IN+AF+ +  G+ +R +++
Sbjct:  320 FGGFKSKDSVPKLVTDFMAKKFPLEPLITHVLPFEKINEAFDLLRAGKSIRTVLT 374

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.338e-18
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = -3

Query:  117 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISME 287
            FG  K + D+P +VD Y+ K+L L+ FITH + F EINKAF  + +G+ LRCI+ M+
Sbjct:  331 FGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINKAFALLEEGKSLRCILWMD 387

HSP 2 Score: 46.2098 bits (108), Expect = 2.338e-18
Identity = 27/77 (35.06%), Postives = 38/77 (49.35%), Query Frame = -2

Query:  271 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLIRELQT 501
            + I EVI EMT GGVD S EC G    +  AF     G G  V++G+    A       ++L  R + G+L   L++
Sbjct:  260 KKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHAAPISLGSFDLLRGRVICGSLFGGLKS 336

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: FADH_YEAST (S-(hydroxymethyl)glutathione dehydrogenase OS=Saccharomyces cerevisiae GN=SFA1 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.338e-18
Identity = 26/68 (38.24%), Postives = 40/68 (58.82%), Query Frame = -2

Query:  292 IQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 495
            I E + EMT+GG+D + +CTGN   M  A E  H GWG ++++GV +      T+P  ++  R  KG+
Sbjct:  258 IVEKLIEMTDGGLDFTFDCTGNTKIMRDALEACHKGWGQSIIIGVAAAGEEISTRPFQLVTGRVWKGS 325

HSP 2 Score: 52.373 bits (124), Expect = 2.338e-18
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = -3

Query:  114 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISMED 287
            FG  K R+++  ++  Y    L++E+FITHR PF EIN+AFE +  G+ LR ++  ++
Sbjct:  327 FGGIKGRSEMGGLIKDYQKGALKVEEFITHRRPFKEINQAFEDLHNGDCLRTVLKSDE 384

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1_MOUSE (Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE=2 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 2.340e-18
Identity = 34/79 (43.04%), Postives = 45/79 (56.96%), Query Frame = -2

Query:  265 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLIRELQTAD 501
            +PIQEV+ EMT+GGVD S E  G +D M SA    H   GV+V+VGVP         P+ +L  RT KG +    ++ D
Sbjct:  249 KPIQEVLQEMTDGGVDFSFEVIGRLDTMTSALLSCHAACGVSVVVGVPPNAQNLSMNPMLLLLGRTWKGAIFGGFKSKD 327

HSP 2 Score: 48.521 bits (114), Expect = 2.340e-18
Identity = 19/55 (34.55%), Postives = 36/55 (65.45%), Query Frame = -3

Query:  123 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 287
            FG +K +  +P +V  +M K+  L+  ITH +PF +IN+AF+ +  G+ +R +++
Sbjct:  320 FGGFKSKDSVPKLVADFMAKKFPLDPLITHVLPFEKINEAFDLLRSGKSIRTVLT 374

[Close]

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1_GEOKN (Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=ADH1 PE=2 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 3.956e-18
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = -2

Query:  289 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTL 501
            +PI +V+ EMT+GGVD S E  G +D M+SA  C  +  GV+V+VGVP         P+ +L+ R+ KG +
Sbjct:  249 KPIYQVLQEMTDGGVDFSFEVIGRLDTMVSALMCCQESHGVSVIVGVPPNAQSLTMDPMVLLSGRSWKGAV 319

HSP 2 Score: 48.1358 bits (113), Expect = 3.956e-18
Identity = 20/55 (36.36%), Postives = 36/55 (65.45%), Query Frame = -3

Query:  123 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 287
            FG YK + D+P +V  +M K+  LE  IT+  PF++IN+ F+ +  G+ +R +++
Sbjct:  320 FGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPFAKINEGFDLLRAGKSIRTVLT 374

The following BLAST results are available for this feature:

BLAST of CN181762 vs. ExPASy Swiss-Prot

BLAST of CN181762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100


Match Name	E-value	Identity	Description
ADH1_RAT	2.200e-19	43.04	Alcohol dehydrogenase 1 OS=Rattus norvegicus GN=Ad...	[more]
ADH4_STRCA	2.861e-19	47.14	Alcohol dehydrogenase 4 OS=Struthio camelus GN=ADH...	[more]
ADHL5_ARATH	3.718e-19	53.57	Alcohol dehydrogenase-like 5 OS=Arabidopsis thalia...	[more]
ADHL2_ARATH	4.837e-19	50.88	Alcohol dehydrogenase-like 2 OS=Arabidopsis thalia...	[more]
FRMA_HAEIN	8.182e-19	32.86	S-(hydroxymethyl)glutathione dehydrogenase OS=Haem...	[more]
ADH1_PERMA	8.183e-19	40.51	Alcohol dehydrogenase 1 OS=Peromyscus maniculatus ...	[more]
ADHL1_ARATH	2.338e-18	49.12	Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia...	[more]
FADH_YEAST	2.338e-18	38.24	S-(hydroxymethyl)glutathione dehydrogenase OS=Sacc...	[more]
ADH1_MOUSE	2.340e-18	43.04	Alcohol dehydrogenase 1 OS=Mus musculus GN=Adh1 PE...	[more]
ADH1_GEOKN	3.956e-18	42.25	Alcohol dehydrogenase 1 OS=Geomys knoxjonesi GN=AD...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0001H03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN181762 ID=CN181762; Name=CN181762; organism=Citrus sinensis; type=EST; length=502bp
AAGACATATACTTAGGGACTGATGCATCAAGTTACAAAGATGAAGTCAAT
AGCAGGTGCTTGCCCACCTACTGTTGTTATTTACTTGATTATTCTTTCCC
TTTTTCGCTCCTAGTCTTCCATGCTGATAATGCACCTCAAACCCTCCCCT
TTCACCATGTACTCGAAGGCTTTATTGATTTCCGAGAAAGGGATGCGATG
GGTTATAAACTTCTCCAGTTCCAGTTGCTTGTTCATGTACATATCAACGA
CAGAGGGCAGATCAGTCCGCGGTTTGTAGTTCCCGAATTAATGTTCCTTT
GAGGGTTCTTTCGTTAAGTACATTGATCGGCTTGGTCATGAACACTGCAT
CCTTACTGGGGACTCCAACGAGCACAGCTACACCCCATCCATCATGAACA
CACTCGAAGGCTGAGATCATGTTATCAATGTTGCCGGTGCACTCCACACT
TCTGTCAACTCCACCGTTCGTCATCTCTGCAATTACCTCTTGAATTGGTC
TG