CN181762 | Citrus Genome Database

Overview


Name	CN181762
Unique Name	CN181762
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	502

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9742	contig	Csv1_Contig9742:769..1269.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1_GEOBU (Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH1 PE=2 SV=3)

HSP 1 Score: 62.3882 bits (150), Expect = 3.956e-18
Identity = 30/71 (42.25%), Postives = 44/71 (61.97%), Query Frame = -2

Query:  289 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTL 501
            +PI +V+ EMT+GGVD S E  G +D M+SA  C  +  GV+V+VGVP         P+ +L+ R+ KG +
Sbjct:  249 KPIYQVLQEMTDGGVDFSFEVIGRLDTMVSALMCCQESHGVSVIVGVPPNAQSLTMDPMVLLSGRSWKGAV 319

HSP 2 Score: 48.1358 bits (113), Expect = 3.956e-18
Identity = 20/55 (36.36%), Postives = 36/55 (65.45%), Query Frame = -3

Query:  123 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 287
            FG YK + D+P +V  +M K+  LE  IT+  PF++IN+ F+ +  G+ +R +++
Sbjct:  320 FGGYKGKDDVPKLVADFMAKKFPLEPLITNVFPFAKINEGFDLLRAGKSIRTVLT 374

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH4_HUMAN (Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE=1 SV=4)

HSP 1 Score: 60.4622 bits (145), Expect = 5.142e-18
Identity = 28/79 (35.44%), Postives = 43/79 (54.43%), Query Frame = -2

Query:  265 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLIRELQTAD 501
            +PIQEVI E+T GGVD +++C G  + M +A +C   GWG    +GV +        P  ++  RT+ GT     ++ D
Sbjct:  254 KPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTFIGVAAGSKGLTVFPEELIIGRTINGTFFGGWKSVD 332

HSP 2 Score: 49.6766 bits (117), Expect = 5.142e-18
Identity = 20/54 (37.04%), Postives = 35/54 (64.81%), Query Frame = -3

Query:  126 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 287
            FG +K    +P +V  Y NK+  L+  +TH +PF +I++AF+ M +G+ +R I+
Sbjct:  325 FGGWKSVDSIPKLVTDYKNKKFNLDALVTHTLPFDKISEAFDLMNQGKSIRTIL 378

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: FRMA_SHISS (S-(hydroxymethyl)glutathione dehydrogenase OS=Shigella sonnei (strain Ss046) GN=frmA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 6.690e-18
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +PI++V+ ++   G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGS 312

HSP 2 Score: 49.6766 bits (117), Expect = 6.690e-18
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = -3

Query:  126 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 287
            FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  314 FGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: FRMA_ECOUT (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 6.690e-18
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +PI++V+ ++   G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGS 312

HSP 2 Score: 49.6766 bits (117), Expect = 6.690e-18
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = -3

Query:  126 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 287
            FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  314 FGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 6.690e-18
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +PI++V+ ++   G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGS 312

HSP 2 Score: 49.6766 bits (117), Expect = 6.690e-18
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = -3

Query:  126 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 287
            FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  314 FGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: FRMA_ECOLC (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=frmA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 6.690e-18
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +PI++V+ ++   G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGS 312

HSP 2 Score: 49.6766 bits (117), Expect = 6.690e-18
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = -3

Query:  126 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 287
            FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  314 FGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 6.690e-18
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +PI++V+ ++   G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGS 312

HSP 2 Score: 49.6766 bits (117), Expect = 6.690e-18
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = -3

Query:  126 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 287
            FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  314 FGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL5 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 6.690e-18
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +PI++V+ ++   G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGS 312

HSP 2 Score: 49.6766 bits (117), Expect = 6.690e-18
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = -3

Query:  126 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 287
            FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  314 FGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: FRMA_ECOK1 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=frmA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 6.690e-18
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +PI++V+ ++   G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGS 312

HSP 2 Score: 49.6766 bits (117), Expect = 6.690e-18
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = -3

Query:  126 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 287
            FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  314 FGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: FRMA_ECOHS (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=frmA PE=3 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 6.690e-18
Identity = 24/70 (34.29%), Postives = 42/70 (60.00%), Query Frame = -2

Query:  292 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGT 501
            +PI++V+ ++   G+D + EC GN++ M +A E  H GWG +V++GV        T+P  ++  R  KG+
Sbjct:  243 KPIKDVLLDINKWGIDHTFECIGNVNVMRAALESAHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGS 312

HSP 2 Score: 49.6766 bits (117), Expect = 6.690e-18
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = -3

Query:  126 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 287
            FG  K R+ LP +V+  M   ++LE F+TH +   EIN AF+ M +G+ +R +I
Sbjct:  314 FGGVKGRSQLPGMVEDAMKGDIDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVI 367

The following BLAST results are available for this feature:

BLAST of CN181762 vs. ExPASy Swiss-Prot

BLAST of CN181762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100


Match Name	E-value	Identity	Description
ADH1_GEOBU	3.956e-18	42.25	Alcohol dehydrogenase 1 OS=Geomys bursarius GN=ADH...	[more]
ADH4_HUMAN	5.142e-18	35.44	Alcohol dehydrogenase 4 OS=Homo sapiens GN=ADH4 PE...	[more]
FRMA_SHISS	6.690e-18	34.29	S-(hydroxymethyl)glutathione dehydrogenase OS=Shig...	[more]
FRMA_ECOUT	6.690e-18	34.29	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECOSM	6.690e-18	34.29	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECOLC	6.690e-18	34.29	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECOL6	6.690e-18	34.29	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECOL5	6.690e-18	34.29	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECOK1	6.690e-18	34.29	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]
FRMA_ECOHS	6.690e-18	34.29	S-(hydroxymethyl)glutathione dehydrogenase OS=Esch...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0001H03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN181762 ID=CN181762; Name=CN181762; organism=Citrus sinensis; type=EST; length=502bp
AAGACATATACTTAGGGACTGATGCATCAAGTTACAAAGATGAAGTCAAT
AGCAGGTGCTTGCCCACCTACTGTTGTTATTTACTTGATTATTCTTTCCC
TTTTTCGCTCCTAGTCTTCCATGCTGATAATGCACCTCAAACCCTCCCCT
TTCACCATGTACTCGAAGGCTTTATTGATTTCCGAGAAAGGGATGCGATG
GGTTATAAACTTCTCCAGTTCCAGTTGCTTGTTCATGTACATATCAACGA
CAGAGGGCAGATCAGTCCGCGGTTTGTAGTTCCCGAATTAATGTTCCTTT
GAGGGTTCTTTCGTTAAGTACATTGATCGGCTTGGTCATGAACACTGCAT
CCTTACTGGGGACTCCAACGAGCACAGCTACACCCCATCCATCATGAACA
CACTCGAAGGCTGAGATCATGTTATCAATGTTGCCGGTGCACTCCACACT
TCTGTCAACTCCACCGTTCGTCATCTCTGCAATTACCTCTTGAATTGGTC
TG