CN181762

Overview
NameCN181762
Unique NameCN181762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9742 contig Csv1_Contig9742:769..1269. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADHL4_ARATH (Alcohol dehydrogenase-like 4 OS=Arabidopsis thaliana GN=At1g64710 PE=2 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 2.143e-15
Identity = 21/56 (37.50%), Postives = 38/56 (67.86%), Query Frame = -3
Query:  120 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 287
            FG +KP+T LP  +   +   L L+ FI+H++PF +IN+A + + +G+ LRC++ +
Sbjct:  325 FGGFKPKTQLPFFITQCLQGLLNLDLFISHQLPFHDINEAMQLLHQGKALRCLLHL 380          

HSP 2 Score: 46.595 bits (109), Expect = 2.143e-15
Identity = 21/71 (29.58%), Postives = 40/71 (56.34%), Query Frame = -2
Query:  289 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTL 501
            + + E + E+T GGV+ S EC G+I+ +  AF   + G GV V++GV +   +    P+ +   R++  ++
Sbjct:  254 KAVHERVMEITEGGVEYSFECAGSIEALREAFLSTNSGVGVTVMLGVHASPQLLPIHPMELFQGRSITASV 324          
BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1B_UROHA (Alcohol dehydrogenase 1B OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 2.786e-15
Identity = 28/80 (35.00%), Postives = 45/80 (56.25%), Query Frame = -2
Query:  265 RPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLIRELQTAD 501
            +PI EV+ +MT+G GV+ S E  G  D M +A    H+ +G +V+VGVP   +     P+ +   RT KG++    ++ D
Sbjct:  248 KPINEVLFDMTDGEGVEYSFEVIGRTDTMTAALASCHNNYGTSVIVGVPPSASQIAFDPLLLFTGRTWKGSVFGGWKSKD 327          

HSP 2 Score: 47.7506 bits (112), Expect = 2.786e-15
Identity = 19/55 (34.55%), Postives = 35/55 (63.64%), Query Frame = -3
Query:  123 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 287
            FG +K +  +P +V  +M K+  L+  ITH +PF +IN+ FE +  G+ +R +++
Sbjct:  320 FGGWKSKDAVPRLVSDFMGKKFILDPLITHTMPFEKINEGFELLRSGKSIRTVLT 374          
BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 51.2174 bits (121), Expect = 7.945e-15
Identity = 19/55 (34.55%), Postives = 36/55 (65.45%), Query Frame = -3
Query:  123 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIIS 287
            FG +K R D+P +V  ++ K+ +L + ITH +PF  I++ FE +  G+ +R +++
Sbjct:  319 FGGWKSRDDVPKLVTEFLEKKFDLGQLITHTLPFHNISEGFELLYSGQSIRTVLT 373          

HSP 2 Score: 48.1358 bits (113), Expect = 7.945e-15
Identity = 23/79 (29.11%), Postives = 40/79 (50.63%), Query Frame = -2
Query:  265 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLIRELQTAD 501
            +PI EV+++MT   V  + E  G ++ M+ A    H  +G +V+VG P    +    P+ +   RT KG +    ++ D
Sbjct:  248 KPISEVLSDMTGNTVQYTFEVIGRLETMVDALSSCHMNYGTSVVVGAPPSAKMLSYDPMLLFTGRTWKGCVFGGWKSRD 326          
BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 48.9062 bits (115), Expect = 2.941e-14
Identity = 19/54 (35.19%), Postives = 34/54 (62.96%), Query Frame = -3
Query:  126 FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 287
            FG +K +  +P +V  +M K+  L+  ITH +PF +IN+ FE +  G+ +R ++
Sbjct:  320 FGGWKSKDSVPRLVSDFMQKKFSLDPLITHTMPFDKINEGFELLRAGKSIRSVL 373          

HSP 2 Score: 48.521 bits (114), Expect = 2.941e-14
Identity = 26/80 (32.50%), Postives = 42/80 (52.50%), Query Frame = -2
Query:  265 RPIQEVIAEMTNG-GVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLIRELQTAD 501
            +PI EV+ ++T G GVD S E  G  D M +A    H  +G +++VG+P   +     P  +   RT KG++    ++ D
Sbjct:  248 KPINEVLFDLTGGEGVDYSFEVIGRTDTMTAALASCHMDYGTSIIVGLPPSASEITFSPGLIFTGRTWKGSVFGGWKSKD 327          
BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADHL6_ARATH (Alcohol dehydrogenase-like 6 OS=Arabidopsis thaliana GN=At5g24760 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 1.999e-13
Identity = 32/68 (47.06%), Postives = 51/68 (75.00%), Query Frame = -3
Query:  120 MYLTKEPSKEH*FGNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCIISM 323
            ++L+ +  K   FG +KP++DLPS++D YMNK++ +++FITH + F EINKAF  M +G+ LRC++ M
Sbjct:  312 LFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAFVLMREGKCLRCVLHM 379          
BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 46.9802 bits (110), Expect = 3.257e-12
Identity = 18/53 (33.96%), Postives = 33/53 (62.26%), Query Frame = -3
Query:  126 GNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 284
            G +K + ++P +V  YM K+  ++  ITH +  SE N+A + M  G+ +RC++
Sbjct:  322 GGWKTKEEIPKLVSDYMAKKFNIDPLITHTLTLSEANEAVQLMKSGQCIRCVL 374          

HSP 2 Score: 43.5134 bits (101), Expect = 3.257e-12
Identity = 26/80 (32.50%), Postives = 44/80 (55.00%), Query Frame = -2
Query:  265 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVG-VPSKDAVFMTKPINVLNERTLKGTLIRELQTAD 501
            +PI+EV+++M +GGVD   E TGN + + +A    H   GV V VG + S  +    +     + R LKG+++   +T +
Sbjct:  249 KPIEEVLSDMIDGGVDFCFEVTGNTEAVGAALGSCHKDHGVCVTVGALASFTSTLSIRSHLFFSGRILKGSILGGWKTKE 328          
BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 44.2838 bits (103), Expect = 2.025e-11
Identity = 16/53 (30.19%), Postives = 32/53 (60.38%), Query Frame = -3
Query:  126 GNYKPRTDLPSVVDMYMNKQLELEKFITHRIPFSEINKAFEYMVKGEGLRCII 284
            G +K + ++P +V  Y  K+  L+  ITH +   ++N+A + M  G+ +RC++
Sbjct:  321 GGWKTKEEIPKLVSDYTAKKFNLDPLITHTLTLDKVNEAIQLMKNGQCIRCVL 373          

HSP 2 Score: 43.5134 bits (101), Expect = 2.025e-11
Identity = 25/79 (31.65%), Postives = 41/79 (51.90%), Query Frame = -2
Query:  265 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLIRELQTAD 501
            +PIQ+V+ +M N G D + E TGN + + +A    H   GV V+VG  +             + RTLKG+++   +T +
Sbjct:  249 KPIQQVLFDMMNDGADFTFEVTGNPETVETALASCHKDHGVCVIVGSLASWIQLNINSHLFFSGRTLKGSVLGGWKTKE 327          
BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1_ALLMI (Alcohol dehydrogenase 1 OS=Alligator mississippiensis PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.240e-11
Identity = 32/71 (45.07%), Postives = 43/71 (60.56%), Query Frame = -2
Query:  289 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTL 501
            +PIQEV++EMT GGVD S E  G ID M +A  C  D +G +V+VGVP         P+ +   RT KG++
Sbjct:  248 KPIQEVLSEMTGGGVDYSFEVIGRIDTMTAALACCQDNYGTSVIVGVPPASEKITFNPMMLFTGRTWKGSV 318          
BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1A_HUMAN (Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.232e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = -2
Query:  286 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLI 501
            +PIQEV+ EMT+GGVD S E  G +D M+++  C H+  G +V+VGVP         P+ +L  RT KG ++
Sbjct:  249 KPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAIL 320          
BLAST of CN181762 vs. ExPASy Swiss-Prot
Match: ADH1A_PONAB (Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 9.445e-11
Identity = 31/72 (43.06%), Postives = 45/72 (62.50%), Query Frame = -2
Query:  286 RPIQEVIAEMTNGGVDRSVECTGNIDNMISAFECVHDGWGVAVLVGVPSKDAVFMTKPINVLNERTLKGTLI 501
            +PIQEV+ EMT+GGVD S E  G +D M+++  C H+  G +V+VGVP         P+ +L  RT KG ++
Sbjct:  249 KPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPDSQNLSMNPMLLLTGRTWKGAVL 320          
The following BLAST results are available for this feature:
BLAST of CN181762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
ADHL4_ARATH2.143e-1537.50Alcohol dehydrogenase-like 4 OS=Arabidopsis thalia... [more]
ADH1B_UROHA2.786e-1535.00Alcohol dehydrogenase 1B OS=Uromastyx hardwickii P... [more]
ADH7_RAT7.945e-1534.55Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
ADH1A_UROHA2.941e-1435.19Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]
ADHL6_ARATH1.999e-1347.06Alcohol dehydrogenase-like 6 OS=Arabidopsis thalia... [more]
ADH6_RAT3.257e-1233.96Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
ADH6_PERMA2.025e-1130.19Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]
ADH1_ALLMI4.240e-1145.07Alcohol dehydrogenase 1 OS=Alligator mississippien... [more]
ADH1A_HUMAN7.232e-1143.06Alcohol dehydrogenase 1A OS=Homo sapiens GN=ADH1A ... [more]
ADH1A_PONAB9.445e-1143.06Alcohol dehydrogenase 1A OS=Pongo abelii GN=ADH1A ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001H03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181762 ID=CN181762; Name=CN181762; organism=Citrus sinensis; type=EST; length=502bp
AAGACATATACTTAGGGACTGATGCATCAAGTTACAAAGATGAAGTCAAT
AGCAGGTGCTTGCCCACCTACTGTTGTTATTTACTTGATTATTCTTTCCC
TTTTTCGCTCCTAGTCTTCCATGCTGATAATGCACCTCAAACCCTCCCCT
TTCACCATGTACTCGAAGGCTTTATTGATTTCCGAGAAAGGGATGCGATG
GGTTATAAACTTCTCCAGTTCCAGTTGCTTGTTCATGTACATATCAACGA
CAGAGGGCAGATCAGTCCGCGGTTTGTAGTTCCCGAATTAATGTTCCTTT
GAGGGTTCTTTCGTTAAGTACATTGATCGGCTTGGTCATGAACACTGCAT
CCTTACTGGGGACTCCAACGAGCACAGCTACACCCCATCCATCATGAACA
CACTCGAAGGCTGAGATCATGTTATCAATGTTGCCGGTGCACTCCACACT
TCTGTCAACTCCACCGTTCGTCATCTCTGCAATTACCTCTTGAATTGGTC
TG
back to top