CN181761

Overview
NameCN181761
Unique NameCN181761
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length643
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1001 contig Csv1_Contig1001:916..1557. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN181761 vs. ExPASy Swiss-Prot
Match: U5S1_PONAB (116 kDa U5 small nuclear ribonucleoprotein component OS=Pongo abelii GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.067e-13
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = -3 
Query:  324 PFYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 560
            P Y IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  867 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957

HSP 2 Score: 30.0314 bits (66), Expect = 1.067e-13
Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = -2 
Query:  556 LGGIYSVLNQKRGHVFEEMQRPGTPL 633
            +  +Y+VL ++RGHV ++   PG+PL
Sbjct:  843 VSAVYTVLARRRGHVTQDAPIPGSPL 868
[Close]
BLAST of CN181761 vs. ExPASy Swiss-Prot
Match: U5S1_MOUSE (116 kDa U5 small nuclear ribonucleoprotein component OS=Mus musculus GN=Eftud2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.067e-13
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = -3 
Query:  324 PFYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 560
            P Y IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  866 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 956

HSP 2 Score: 30.0314 bits (66), Expect = 1.067e-13
Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = -2 
Query:  556 LGGIYSVLNQKRGHVFEEMQRPGTPL 633
            +  +Y+VL ++RGHV ++   PG+PL
Sbjct:  842 VSAVYTVLARRRGHVTQDAPIPGSPL 867
[Close]
BLAST of CN181761 vs. ExPASy Swiss-Prot
Match: U5S1_HUMAN (116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens GN=EFTUD2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.067e-13
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = -3 
Query:  324 PFYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 560
            P Y IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  867 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957

HSP 2 Score: 30.0314 bits (66), Expect = 1.067e-13
Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = -2 
Query:  556 LGGIYSVLNQKRGHVFEEMQRPGTPL 633
            +  +Y+VL ++RGHV ++   PG+PL
Sbjct:  843 VSAVYTVLARRRGHVTQDAPIPGSPL 868
[Close]
BLAST of CN181761 vs. ExPASy Swiss-Prot
Match: U5S1_CHICK (116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.067e-13
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = -3 
Query:  324 PFYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 560
            P Y IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  867 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957

HSP 2 Score: 30.0314 bits (66), Expect = 1.067e-13
Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = -2 
Query:  556 LGGIYSVLNQKRGHVFEEMQRPGTPL 633
            +  +Y+VL ++RGHV ++   PG+PL
Sbjct:  843 VSAVYTVLARRRGHVTQDAPIPGSPL 868
[Close]
BLAST of CN181761 vs. ExPASy Swiss-Prot
Match: U5S1_BOVIN (116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus GN=EFTUD2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.067e-13
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = -3 
Query:  324 PFYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGT------------QAAQLVADIRKRKGLKEQMTPLSEFEDKL 560
            P Y IKA++P I+SFGF   LR  T GQAF   VF HW ++  DPL+                A + +   R+RKGL E ++    F+D +
Sbjct:  867 PLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPM 957

HSP 2 Score: 30.0314 bits (66), Expect = 1.067e-13
Identity = 11/26 (42.31%), Postives = 19/26 (73.08%), Query Frame = -2 
Query:  556 LGGIYSVLNQKRGHVFEEMQRPGTPL 633
            +  +Y+VL ++RGHV ++   PG+PL
Sbjct:  843 VSAVYTVLARRRGHVTQDAPIPGSPL 868
[Close]
BLAST of CN181761 vs. ExPASy Swiss-Prot
Match: SN114_SCHPO (114 kDa U5 small nuclear ribonucleoprotein component homolog OS=Schizosaccharomyces pombe GN=cwf10 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 1.386e-13
Identity = 32/91 (35.16%), Postives = 47/91 (51.65%), Query Frame = -3 
Query:  324 PFYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQ------------AAQLVADIRKRKGLKEQMTPLSEFEDKL 560
            P Y ++A +PVI+S GF   LR  T GQA  Q VFDHW ++  DPL+   +            A   +   R+RKGL E ++    F+ ++
Sbjct:  880 PLYLVRALIPVIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPLEPARGSDLARDFLIKTRRRKGLVEDVSTTRYFDQEM 970

HSP 2 Score: 33.8834 bits (76), Expect = 1.386e-13
Identity = 12/23 (52.17%), Postives = 19/23 (82.61%), Query Frame = -2 
Query:  556 IYSVLNQKRGHVFEEMQRPGTPL 624
            IY +L ++RGHV +++ RPG+PL
Sbjct:  859 IYDLLTRRRGHVLQDIPRPGSPL 881
The following BLAST results are available for this feature:
BLAST of CN181761 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
U5S1_PONAB1.067e-1337.36116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_MOUSE1.067e-1337.36116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_HUMAN1.067e-1337.36116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_CHICK1.067e-1337.36116 kDa U5 small nuclear ribonucleoprotein compone... [more]
U5S1_BOVIN1.067e-1337.36116 kDa U5 small nuclear ribonucleoprotein compone... [more]
SN114_SCHPO1.386e-1335.16114 kDa U5 small nuclear ribonucleoprotein compone... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001H02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181761 ID=CN181761; Name=CN181761; organism=Citrus sinensis; type=EST; length=643bp
GGCCAGAATTAGTTTAAACACATGACAGAACATCAAACCTTAAAAGCTGT
GAATTGTAAAATTTAAAACCTAGATGACAGAGACAGGGTTACTAAACCCA
ATCAACAGTAATATTACTTTACTAAACACAATGAGGATATTGAAAAACTT
TGAAACAAAAATAAGCATCAGCAAAAAATATTGCTGCGCAATCTCACCCT
TGATGTCAAGATGAAATGTTTACAGCTCGTCCTCTACTCGGATAGCGGTG
TCATTTGCTCCCTCTTCCTGATATCAGCAACAAGCTGCGCAATCTCACCC
TTGATGTCAAGACGAAATGTTTACAGCTTGTCCTCAAACTCAGATAGTGG
TGTCATTTGCTCCTTCAAGCCCTTCCTCTTCCTGATATCAGCAACAAGCT
GTGCAGCCTGTGTACCAGGCTCCAGTGGATCGGATGACATCATGTCCCAG
TGATCAAACACACATTGTGGGAAGGCCTGTCCTGACGTTGCAGCCCTCAA
AGTGCCTGAGAATCCAAAGGACTCGATGACGGGAAGGTAAGCCTTGATGT
TGTAAAAGGGGGGTACCAGGTCTCTGCATTTCCTCGAACACGTGACCACG
TTTCTGATTGAGAACACTGTAAATACCACCCAAGGCCTGCTCG
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