CN181757

Overview
NameCN181757
Unique NameCN181757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5436 contig Csv1_Contig5436:252..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_STAAS (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=pdhD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = -1
Query:  325 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAA 675
            +PA CFT PE++ VG +E QA+E    EG  +  +K  + AN +AL+ ++  G  KLI   ++  ++G  + G  A+D+I E   AI  G   +DI   +HAHPTL E+  E  + A
Sbjct:  348 MPAVCFTEPELATVGYSEAQAKE----EGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGASDIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKA 460          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_STAAR (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain MRSA252) GN=pdhD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = -1
Query:  325 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAA 675
            +PA CFT PE++ VG +E QA+E    EG  +  +K  + AN +AL+ ++  G  KLI   ++  ++G  + G  A+D+I E   AI  G   +DI   +HAHPTL E+  E  + A
Sbjct:  348 MPAVCFTEPELATVGYSEAQAKE----EGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGASDIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKA 460          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_STAAN (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain N315) GN=pdhD PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = -1
Query:  325 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAA 675
            +PA CFT PE++ VG +E QA+E    EG  +  +K  + AN +AL+ ++  G  KLI   ++  ++G  + G  A+D+I E   AI  G   +DI   +HAHPTL E+  E  + A
Sbjct:  348 MPAVCFTEPELATVGYSEAQAKE----EGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGASDIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKA 460          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_STAAM (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhD PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = -1
Query:  325 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAA 675
            +PA CFT PE++ VG +E QA+E    EG  +  +K  + AN +AL+ ++  G  KLI   ++  ++G  + G  A+D+I E   AI  G   +DI   +HAHPTL E+  E  + A
Sbjct:  348 MPAVCFTEPELATVGYSEAQAKE----EGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGASDIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKA 460          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_STAAC (Dihydrolipoyl dehydrogenase OS=Staphylococcus aureus (strain COL) GN=pdhD PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 44/117 (37.61%), Postives = 67/117 (57.26%), Query Frame = -1
Query:  325 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAA 675
            +PA CFT PE++ VG +E QA+E    EG  +  +K  + AN +AL+ ++  G  KLI   ++  ++G  + G  A+D+I E   AI  G   +DI   +HAHPTL E+  E  + A
Sbjct:  348 MPAVCFTEPELATVGYSEAQAKE----EGLAIKASKFPYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVVGTGASDIISELGLAIEAGMNAEDIALTIHAHPTLGEMTMEAAEKA 460          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_PONAB (Dihydrolipoyl dehydrogenase, mitochondrial OS=Pongo abelii GN=DLD PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 44/117 (37.61%), Postives = 66/117 (56.41%), Query Frame = -1
Query:  325 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAA 675
            +P+  +THPE++ VG +E Q +E    EG E  V K  F AN++A    + +G+ K++ +     +LG HI G  A  +++EA+ A+  G   +DI    HAHPTLSE   E   AA
Sbjct:  389 VPSVIYTHPEVAWVGKSEEQLKE----EGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGGMVNEAALALEYGASCEDIARVCHAHPTLSEAFREANLAA 501          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_HALVO (Dihydrolipoyl dehydrogenase OS=Halobacterium volcanii GN=lpdA PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.161e-16
Identity = 43/113 (38.05%), Postives = 68/113 (60.18%), Query Frame = -1
Query:  340 SIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDE 678
            ++PAA FT PEI  VG+TE  A    E+ GF   V +  F+A+ +AL  N  +G  +++   ++G +LG  I G  A++LI E + AI +G  ++D+   +H HPTL+E + E
Sbjct:  352 AVPAAVFTDPEIGTVGMTEADA----EEAGFTPVVGQMPFRASGRALTTNHADGFVRVVADEESGFVLGAQIVGPEASELIAELAFAIEMGATLEDVASTIHTHPTLAEAVME 460          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH2_PSEPU (Dihydrolipoamide dehydrogenase OS=Pseudomonas putida GN=lpdG PE=1 SV=4)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 45/112 (40.18%), Postives = 66/112 (58.93%), Query Frame = -1
Query:  340 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDE 675
            IP+  +THPEI+ VG TE    +  + EG EV+V    F A+ +A+A N+  G  K+I       +LGVH+ G  AA+L+ + + A+  GT  +D+   V +HPTLSE L E
Sbjct:  353 IPSVIYTHPEIAWVGKTE----QALKAEGVEVNVGTFPFAASGRAMAANDTGGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFSHPTLSEALHE 460          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_YEAST (Dihydrolipoyl dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=LPD1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = -1
Query:  325 SIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAA 678
            +IP+  ++HPE++ VG TE Q +E     G +  + K  F AN++A    + EG  K++       ILG HI G +A ++I EA  A+  G   +D+    HAHPTLSE   E   AA
Sbjct:  379 NIPSVMYSHPEVAWVGKTEEQLKEA----GIDYKIGKFPFAANSRAKTNQDTEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAA 492          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH3_HALMA (Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marismortui GN=lpdA3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = -1
Query:  316 SIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAAKVK 678
            ++PAA FT PEI  VGLTE +A  K    G      +  F+A+ +AL  N  EG  ++I   +   ++G  I G  A++LI E +  I +G +++DI   VH HPTLSE + E  + A+ K
Sbjct:  355 ALPAAVFTDPEIGTVGLTENEAANK----GMTPVTGEFQFQASGRALTANRAEGFVRIIATKETERVIGAQIVGPEASELIAEIAAMIEMGAKLEDIGSTVHTHPTLSEAIMEAAQNAREK 471          
The following BLAST results are available for this feature:
BLAST of CN181757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
DLDH_STAAS2.161e-1637.61Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAR2.161e-1637.61Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAN2.161e-1637.61Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAM2.161e-1637.61Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_STAAC2.161e-1637.61Dihydrolipoyl dehydrogenase OS=Staphylococcus aure... [more]
DLDH_PONAB2.161e-1637.61Dihydrolipoyl dehydrogenase, mitochondrial OS=Pong... [more]
DLDH_HALVO2.161e-1638.05Dihydrolipoyl dehydrogenase OS=Halobacterium volca... [more]
DLDH2_PSEPU2.822e-1640.18Dihydrolipoamide dehydrogenase OS=Pseudomonas puti... [more]
DLDH_YEAST4.814e-1637.29Dihydrolipoyl dehydrogenase, mitochondrial OS=Sacc... [more]
DLDH3_HALMA4.814e-1638.02Dihydrolipoyl dehydrogenase 3 OS=Haloarcula marism... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181757 ID=CN181757; Name=CN181757; organism=Citrus sinensis; type=EST; length=678bp
TCTTATTTCAGCAATATTGTCCAGGATTGAAAGCAGAAAATAAATTTCCA
ATTAGAAACTATTATGAATATTAGTACTTCTGCAAAGCATACACAAGGCA
GAGAAACCAGGATACAAATGTCATATAAACATCTGCAAGTTTCTTCACCA
GGTTTGGTTTGCTAGGACGGTCACGGTGTTGATTAGTTCTCTCTGAGGAT
GCAAAATTCCTTGGTACTCCCTAGCACAAGCAAATTTCTTCAAAATTTAA
TATTTCCCAAGCGTCGAGATGCTTTAGACTGCAACTGGTTCACTTACTGG
ATTAGAAGCATGATCTTTAACCTTTGCTGCTTTAAACAGTTCGTCTAGAA
CTTCAGAGAGAGTTGGATGTGCATGAACCGCAAATTTTATGTCCTGAATA
CGTGTGCCTAATGCAATAGCATTAGATGCTTCATGGATAAGGTCTGCAGC
ATGCAGCCCAAAGATATGAACTCCAAGAATCTCACCGTTGTCTGGTCTGT
ATATTAACTTAGCAAGTCCCTCCCCTTCGTTTTCTGCTAAGGCCTTGGTG
TTAGCTTTGAAGCTTGTTTTCGCTACACTTACTTCAAATCCCTCCTTTTC
AGCCTTTTCCCTTGCCTGAGGCTCGGTCAATCCAACCATACTAATTTCAG
GATGTGTGAAACAAGCTGCTGGTATGCT
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