CN181757

Overview
NameCN181757
Unique NameCN181757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5436 contig Csv1_Contig5436:252..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_AZOVI (Dihydrolipoyl dehydrogenase OS=Azotobacter vinelandii PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 48/123 (39.02%), Postives = 68/123 (55.28%), Query Frame = -1
Query:  307 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAAKVKDHA 675
            IPA  +THPEI+ VG TE    +  + EG  ++V    F A+ +A+A N+  G  K+I       +LGVH+ G  AA+L+ + + A+  GT  +D+   V AHP LSE L E   A  V  HA
Sbjct:  353 IPAVIYTHPEIAGVGKTE----QALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHE--AALAVSGHA 469          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_THESC (Dihydrolipoyl dehydrogenase OS=Thermus scotoductus GN=lpd PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.389e-15
Identity = 46/116 (39.66%), Postives = 67/116 (57.76%), Query Frame = -1
Query:  328 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKA 675
            +P+  +T PE + VGLTE +AR    K G+ V V K  F A+ +AL     EGL K++   +   +LGV + G  A +LI EA+ A+ +G  + D+   +H HPTLSE L E  +A
Sbjct:  339 VPSVVYTGPEWAGVGLTEEEAR----KAGYNVKVGKFPFSASGRALTLGGAEGLIKVVGDAETDLLLGVFVVGPQAGELIAEATLALEMGATVSDLGLTIHPHPTLSEGLMEAAEA 450          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_HALSA (Dihydrolipoyl dehydrogenase OS=Halobacterium salinarium GN=lpdA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.952e-15
Identity = 42/113 (37.17%), Postives = 64/113 (56.64%), Query Frame = -1
Query:  340 SIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDE 678
            ++PAA FT PEI  VGLTE    + A  +GF+  V    F A+ +AL     +G  +++   ++G +LG  I G  A++L+ E   AI +G  ++D+   +H HPTLSE   E
Sbjct:  351 AVPAAVFTDPEIGTVGLTE----DDAAAQGFDPVVGTFPFNASGRALTTGHDDGFVEVVADEESGFLLGAQIVGPEASELVAELGLAIEMGATLEDVASTIHTHPTLSEATME 459          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH2_BACSU (Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=bfmBC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.079e-15
Identity = 45/120 (37.50%), Postives = 63/120 (52.50%), Query Frame = -1
Query:  316 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAAKVK 675
            +P   ++ PE + VGLTE    ++A+  G  V + K  F A  KAL   E +G  K++   D  +ILGVH+ G H  D+I EA  A  L     ++   +H HPTLSE + E   AA  K
Sbjct:  355 VPKCIYSSPEAASVGLTE----DEAKANGHNVKIGKFPFMAIGKALVYGESDGFVKIVADRDTDDILGVHMIGPHVTDMISEAGLAKVLDATPWEVGQTIHPHPTLSEAIGEAALAADGK 470          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_MYCTU (Dihydrolipoyl dehydrogenase OS=Mycobacterium tuberculosis GN=lpd PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = -1
Query:  334 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELF 675
            +P A F  P ++  GLTE QAR     EG++V VAK  F AN KA    +  G  KL+    +GE+LG H+ G   A+L+ E + A        ++   VH HPT+SE L E F
Sbjct:  345 LPRATFCQPNVASFGLTEQQARN----EGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECF 454          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_MYCBO (Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis GN=lpd PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 45/114 (39.47%), Postives = 61/114 (53.51%), Query Frame = -1
Query:  334 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELF 675
            +P A F  P ++  GLTE QAR     EG++V VAK  F AN KA    +  G  KL+    +GE+LG H+ G   A+L+ E + A        ++   VH HPT+SE L E F
Sbjct:  345 LPRATFCQPNVASFGLTEQQARN----EGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTMSEALQECF 454          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAI (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=lpdA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 44/108 (40.74%), Postives = 63/108 (58.33%), Query Frame = -1
Query:  352 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSE 675
            IP+  +T PEI+ VGL+E +A++    E     VA   + A+ +A+A N   G  KLI+   N +I+G  I G +A +LI E   AI +G   +DI   +HAHPTLSE
Sbjct:  347 IPSIAYTDPEIAWVGLSEKEAKQ----ENINYEVAIFPWNASGRAIASNCSIGKTKLIFNKQNNKIIGGSIVGSNAGELIGEVGLAIEMGCDAEDIALTIHAHPTLSE 450          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_RHOCA (Dihydrolipoyl dehydrogenase OS=Rhodobacter capsulatus GN=lpd PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 44/112 (39.29%), Postives = 58/112 (51.79%), Query Frame = -1
Query:  340 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDE 675
            IP   +T PE++ VG TE    +  ++EG    V K SF  N +A A  + EG  K++       ILG HI G  A D+IHE   A+  G   QD+    HAHPT SE + E
Sbjct:  335 IPGVIYTTPEVAAVGKTE----DALKQEGRAYKVGKFSFMGNGRAKAVFQAEGFVKILADAATDRILGAHIIGPSAGDMIHEICVAMEFGASAQDLALTCHAHPTYSEAVRE 442          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_TRYCR (Dihydrolipoyl dehydrogenase OS=Trypanosoma cruzi GN=LPD PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.642e-14
Identity = 47/120 (39.17%), Postives = 64/120 (53.33%), Query Frame = -1
Query:  316 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAAKVK 675
            IPA  +T PE++ VG +E    E+ +KEG    V K  F AN++A A +  +G  K++       ILGVHI    A +LI EA  A+  G   +D+    HAHPT+SE L E   A   K
Sbjct:  358 IPAVIYTMPEVASVGKSE----EELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHAHPTMSEALKEACMALVAK 473          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_ZYMMO (Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis GN=lpd PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 41/118 (34.75%), Postives = 64/118 (54.24%), Query Frame = -1
Query:  325 SIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAA 678
            +IP   +  P+++ VGLTE    EKA ++G+ V +    F AN KA+A+   +G  K ++  D+G +LG H+ G    ++I   + A  L T   +I   +  HPTLSE + E   AA
Sbjct:  346 NIPGCTYARPQVASVGLTE----EKARQQGYNVKIGNFPFIANGKAIAQGATDGFVKTVFDADSGALLGAHMVGAEVTEMIQGYTVARTLETTEAEIMETIFPHPTLSEAMHESVLAA 459          
The following BLAST results are available for this feature:
BLAST of CN181757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
DLDH_AZOVI1.072e-1539.02Dihydrolipoyl dehydrogenase OS=Azotobacter vinelan... [more]
DLDH_THESC2.389e-1539.66Dihydrolipoyl dehydrogenase OS=Thermus scotoductus... [more]
DLDH_HALSA6.952e-1537.17Dihydrolipoyl dehydrogenase OS=Halobacterium salin... [more]
DLDH2_BACSU9.079e-1537.50Dihydrolipoyl dehydrogenase OS=Bacillus subtilis G... [more]
DLDH_MYCTU1.549e-1439.47Dihydrolipoyl dehydrogenase OS=Mycobacterium tuber... [more]
DLDH_MYCBO1.549e-1439.47Dihydrolipoyl dehydrogenase OS=Mycobacterium bovis... [more]
DLDH_BUCAI1.549e-1440.74Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH_RHOCA2.023e-1439.29Dihydrolipoyl dehydrogenase OS=Rhodobacter capsula... [more]
DLDH_TRYCR2.642e-1439.17Dihydrolipoyl dehydrogenase OS=Trypanosoma cruzi G... [more]
DLDH_ZYMMO3.450e-1434.75Dihydrolipoyl dehydrogenase OS=Zymomonas mobilis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181757 ID=CN181757; Name=CN181757; organism=Citrus sinensis; type=EST; length=678bp
TCTTATTTCAGCAATATTGTCCAGGATTGAAAGCAGAAAATAAATTTCCA
ATTAGAAACTATTATGAATATTAGTACTTCTGCAAAGCATACACAAGGCA
GAGAAACCAGGATACAAATGTCATATAAACATCTGCAAGTTTCTTCACCA
GGTTTGGTTTGCTAGGACGGTCACGGTGTTGATTAGTTCTCTCTGAGGAT
GCAAAATTCCTTGGTACTCCCTAGCACAAGCAAATTTCTTCAAAATTTAA
TATTTCCCAAGCGTCGAGATGCTTTAGACTGCAACTGGTTCACTTACTGG
ATTAGAAGCATGATCTTTAACCTTTGCTGCTTTAAACAGTTCGTCTAGAA
CTTCAGAGAGAGTTGGATGTGCATGAACCGCAAATTTTATGTCCTGAATA
CGTGTGCCTAATGCAATAGCATTAGATGCTTCATGGATAAGGTCTGCAGC
ATGCAGCCCAAAGATATGAACTCCAAGAATCTCACCGTTGTCTGGTCTGT
ATATTAACTTAGCAAGTCCCTCCCCTTCGTTTTCTGCTAAGGCCTTGGTG
TTAGCTTTGAAGCTTGTTTTCGCTACACTTACTTCAAATCCCTCCTTTTC
AGCCTTTTCCCTTGCCTGAGGCTCGGTCAATCCAACCATACTAATTTCAG
GATGTGTGAAACAAGCTGCTGGTATGCT
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