CN181757

Overview
NameCN181757
Unique NameCN181757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5436 contig Csv1_Contig5436:252..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_CHLPN (Dihydrolipoyl dehydrogenase OS=Chlamydia pneumoniae GN=lpdA PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 46/113 (40.71%), Postives = 65/113 (57.52%), Query Frame = -1
Query:  340 SIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDE 678
            +IP+  FTHPEI+MVGL+     ++AE++     + K  FKA  KA+A    +G A ++      +ILG ++ G HA+ LI E + AI     +  I   VHAHPTLSEV  E
Sbjct:  337 AIPSVIFTHPEIAMVGLS----LQEAEQQNLPAKLTKFPFKAIGKAVALGASDGFAAIVSHEITQQILGAYVIGPHASSLIGEMTLAIRNELTLPCIYETVHAHPTLSEVWAE 445          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_CHLP8 (Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvum (strain NCIB 8327) GN=lpd PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = -1
Query:  325 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAA 675
            IP   +  P ++ VGLTE    E A   G++V V ++ F A+ KA A  + EG  KL++  + G++LG H+ G  A +LI E   A   G   + +   VHAHPTLSE + E   AA
Sbjct:  352 IPRCVYAQPSVASVGLTE----EAAIAAGYKVLVGRSQFAASGKANAYGQLEGFVKLVFNAETGKMLGGHLIGHDAVELIGELGLACRYGVTAEGLVGTVHAHPTLSETVREAAFAA 464          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_RHIET (Probable dihydrolipoyl dehydrogenase (Fragment) OS=Rhizobium etli PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  340 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDE 675
            +P   + +P+++ VGLTE +A+E     G ++ V + SF AN KA+A  E +G+ K+I+    GE+LG H+ G    +LI     A+ L T  +++   +  HPT+SE + E
Sbjct:  161 VPGCTYCNPQVASVGLTEAKAKEL----GSDIRVGRFSFAANRKAIALGEDQGMVKVIFDKKTGELLGAHMVGAEVTELIQGFVVAMNLETTEEELMHTIFPHPTVSETMKE 268          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_HAEIN (Dihydrolipoyl dehydrogenase OS=Haemophilus influenzae GN=lpdA PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.506e-14
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = -1
Query:  352 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSE 675
            IP+  +T PE++ VG TE + ++    EG    VAK  + A+ +A+A    EG+ KLI+  D   +LG  I G +  +L+ E   AI +G   +DI   +HAHPTL E
Sbjct:  347 IPSIAYTEPEVAWVGKTEKECKQ----EGLNYEVAKFPWAASGRAIASECSEGMTKLIFDKDTHRVLGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 450          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEAE (Dihydrolipoyl dehydrogenase OS=Pseudomonas aeruginosa GN=lpdV PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 39/113 (34.51%), Postives = 63/113 (55.75%), Query Frame = -1
Query:  340 SIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDE 678
            +IPA CFT PE+ + GL+  QA++     G +  VA   F AN +A+     EG  +++ R DN  ++G    G   ++L    + ++ +G R++DI   +HAHPTL E + E
Sbjct:  344 AIPAVCFTDPEVVVAGLSPEQAKDA----GLDCLVASFPFAANGRAMTLEANEGFVRVVARRDNHLVVGWQAVGKAVSELSTAFAQSLEMGARLEDIAGTIHAHPTLGEAVQE 452          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_SHIFL (Dihydrolipoyl dehydrogenase OS=Shigella flexneri GN=lpdA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = -1
Query:  352 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSE 675
            IP+  +T PE++ VGLTE +A+EK    G     A   + A+ +A+A +  +G+ KLI+  ++  ++G  I G +  +L+ E   AI +G   +DI   +HAHPTL E
Sbjct:  347 IPSIAYTEPEVAWVGLTEKEAKEK----GISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 450          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_ECOLI (Dihydrolipoyl dehydrogenase OS=Escherichia coli (strain K12) GN=lpdA PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = -1
Query:  352 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSE 675
            IP+  +T PE++ VGLTE +A+EK    G     A   + A+ +A+A +  +G+ KLI+  ++  ++G  I G +  +L+ E   AI +G   +DI   +HAHPTL E
Sbjct:  347 IPSIAYTEPEVAWVGLTEKEAKEK----GISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 450          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_ECOL6 (Dihydrolipoyl dehydrogenase OS=Escherichia coli O6 GN=lpdA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = -1
Query:  352 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSE 675
            IP+  +T PE++ VGLTE +A+EK    G     A   + A+ +A+A +  +G+ KLI+  ++  ++G  I G +  +L+ E   AI +G   +DI   +HAHPTL E
Sbjct:  347 IPSIAYTEPEVAWVGLTEKEAKEK----GISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 450          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_ECO57 (Dihydrolipoyl dehydrogenase OS=Escherichia coli O157:H7 GN=lpdA PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 39/108 (36.11%), Postives = 63/108 (58.33%), Query Frame = -1
Query:  352 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSE 675
            IP+  +T PE++ VGLTE +A+EK    G     A   + A+ +A+A +  +G+ KLI+  ++  ++G  I G +  +L+ E   AI +G   +DI   +HAHPTL E
Sbjct:  347 IPSIAYTEPEVAWVGLTEKEAKEK----GISYETATFPWAASGRAIASDCADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 450          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_CHLMU (Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum GN=lpdA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = -1
Query:  340 SIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDE 678
            ++P+  FT PE++ VGL+   A++    +G  V V K  F+A  KA+A  E +G A +I    + +ILG ++ G HA+ LI E + AI     +  I   +HAHPTL+EV  E
Sbjct:  340 AVPSVIFTFPEVASVGLSPTSAQQ----QGIPVKVTKFPFRAIGKAVAMGESDGFAAIISHETSQQILGAYVIGPHASSLISEITLAIRNELTLPCIYETIHAHPTLAEVWAE 448          
The following BLAST results are available for this feature:
BLAST of CN181757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
DLDH_CHLPN3.450e-1440.71Dihydrolipoyl dehydrogenase OS=Chlamydia pneumonia... [more]
DLDH_CHLP83.450e-1438.46Dihydrolipoyl dehydrogenase OS=Chlorobaculum parvu... [more]
DLDH_RHIET4.506e-1434.82Probable dihydrolipoyl dehydrogenase (Fragment) OS... [more]
DLDH_HAEIN4.506e-1437.96Dihydrolipoyl dehydrogenase OS=Haemophilus influen... [more]
DLDH1_PSEAE5.885e-1434.51Dihydrolipoyl dehydrogenase OS=Pseudomonas aerugin... [more]
DLDH_SHIFL1.004e-1336.11Dihydrolipoyl dehydrogenase OS=Shigella flexneri G... [more]
DLDH_ECOLI1.004e-1336.11Dihydrolipoyl dehydrogenase OS=Escherichia coli (s... [more]
DLDH_ECOL61.004e-1336.11Dihydrolipoyl dehydrogenase OS=Escherichia coli O6... [more]
DLDH_ECO571.004e-1336.11Dihydrolipoyl dehydrogenase OS=Escherichia coli O1... [more]
DLDH_CHLMU1.311e-1338.05Dihydrolipoyl dehydrogenase OS=Chlamydia muridarum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181757 ID=CN181757; Name=CN181757; organism=Citrus sinensis; type=EST; length=678bp
TCTTATTTCAGCAATATTGTCCAGGATTGAAAGCAGAAAATAAATTTCCA
ATTAGAAACTATTATGAATATTAGTACTTCTGCAAAGCATACACAAGGCA
GAGAAACCAGGATACAAATGTCATATAAACATCTGCAAGTTTCTTCACCA
GGTTTGGTTTGCTAGGACGGTCACGGTGTTGATTAGTTCTCTCTGAGGAT
GCAAAATTCCTTGGTACTCCCTAGCACAAGCAAATTTCTTCAAAATTTAA
TATTTCCCAAGCGTCGAGATGCTTTAGACTGCAACTGGTTCACTTACTGG
ATTAGAAGCATGATCTTTAACCTTTGCTGCTTTAAACAGTTCGTCTAGAA
CTTCAGAGAGAGTTGGATGTGCATGAACCGCAAATTTTATGTCCTGAATA
CGTGTGCCTAATGCAATAGCATTAGATGCTTCATGGATAAGGTCTGCAGC
ATGCAGCCCAAAGATATGAACTCCAAGAATCTCACCGTTGTCTGGTCTGT
ATATTAACTTAGCAAGTCCCTCCCCTTCGTTTTCTGCTAAGGCCTTGGTG
TTAGCTTTGAAGCTTGTTTTCGCTACACTTACTTCAAATCCCTCCTTTTC
AGCCTTTTCCCTTGCCTGAGGCTCGGTCAATCCAACCATACTAATTTCAG
GATGTGTGAAACAAGCTGCTGGTATGCT
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