CN181757

Overview
NameCN181757
Unique NameCN181757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5436 contig Csv1_Contig5436:252..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_CHLTE (Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum GN=lpd PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 43/112 (38.39%), Postives = 61/112 (54.46%), Query Frame = -1
Query:  340 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDE 675
            IP   +  P ++ VGLTE    E A   G++V+V ++ F A+ KA A  + EG  KL++    G++LG H+ G  A +LI E   A   G     +   VHAHPTLSE + E
Sbjct:  352 IPRCVYAQPSVASVGLTE----EAAVNAGYQVAVGRSQFAASGKANAYGQLEGFVKLVFDAATGKMLGGHLIGHDAVELIGELGLACRYGVTAGGLVNTVHAHPTLSETVRE 459          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_MYCLE (Dihydrolipoyl dehydrogenase OS=Mycobacterium leprae GN=lpd PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 44/114 (38.60%), Postives = 61/114 (53.51%), Query Frame = -1
Query:  334 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELF 675
            +P A F  P ++  GLTE QAR+     G++V VAK  F AN KA    +  G  KL+     GE+LG H+ G + ++L+ E + A        ++   VH HPTLSE L E F
Sbjct:  348 MPRATFCQPNVASFGLTEQQARDG----GYDVVVAKFPFTANAKAHGMGDPSGFVKLVADAKYGELLGGHMIGHNVSELLPELTLAQKWDLTATELVRNVHTHPTLSEALQECF 457          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_BUCAP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=lpdA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 41/108 (37.96%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  352 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSE 675
            IP+  +T PEI+ VGL+E    ++AE    +  V+   + A+ +A A N   G+ KLI+  +  +I+G  I G +A++LI E   AI +G+  +DI   +H HPTLSE
Sbjct:  348 IPSVAYTDPEIAWVGLSE----KEAENNDIDYEVSLFPWSASGRAHASNCTLGMTKLIFNKNTNKIIGGSIIGTNASELISEIGLAIEMGSDAEDISLTIHPHPTLSE 451          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH3_PSEPU (Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas putida GN=lpd3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = -1
Query:  346 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVL 675
            IP   +T PE++ VG TE    E+ + EG    V K  F AN++A   +E EG AK+I   +  E+LGVH+ G   +++I E   A+      +DI    H HPT SE L
Sbjct:  347 IPGVIYTRPELATVGKTE----EQLKAEGRAYKVGKFPFTANSRAKINHETEGFAKVIADAETDEVLGVHLVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHPTRSEAL 452          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_VIBPA (Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyticus GN=lpd PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = -1
Query:  352 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSE 675
            IP+  +T PE++ VG TE +A+     EG +  VA   + A+ +A+A +  +G+ KLI+  +   ++G  I G +  +L+ E   AI +G   +DI   +HAHPTL E
Sbjct:  347 IPSIAYTEPEVAWVGKTEKEAKA----EGIKYEVATFPWAASGRAIASDCSDGMTKLIFDKETHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 450          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_RALEH (Dihydrolipoyl dehydrogenase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=odhL PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = -1
Query:  340 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDE 675
            +P   +T PEI+ VG TE Q +     EG E    +  F AN +AL     +G  K++      EILGVHI   +A+DLI EA  A+      +DI    H HP++SEV+ E
Sbjct:  355 VPWVIYTFPEIAWVGKTEAQLKA----EGREYKAGQFPFMANGRALGMGHADGFVKMLADAKTDEILGVHIVAANASDLIAEAVVAMEFKAASEDIGRVCHPHPSMSEVMRE 462          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH3_BACSU (Dihydrolipoyl dehydrogenase OS=Bacillus subtilis GN=acoL PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  340 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDI-KFAVHAHPTLSEVLDE 675
            +P   +T PEI+ +G+TE QAR        +V + + SF AN KAL + + EG  K++  P+ GEI+GV + G    +LI +A+ AI  G    D+ +  + AHPTLSE L E
Sbjct:  339 VPRCIYTSPEIACIGMTERQARSIYG----DVKIGEFSFSANGKALIKQQAEGKVKIMAEPEFGEIVGVSMIGPDVTELIGQAA-AIMNGEMTADMAEHFIAAHPTLSETLHE 446          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH1_PSEPU (Dihydrolipoyl dehydrogenase OS=Pseudomonas putida GN=lpdV PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 38/113 (33.63%), Postives = 64/113 (56.64%), Query Frame = -1
Query:  340 SIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDE 678
            +I A CFT PE+ +VG T     E+A ++G +  VA+  F AN +A++     G  +++ R DN  ILG    G+  ++L    + ++ +G  ++D+   +HAHPTL E + E
Sbjct:  339 AIAAVCFTDPEVVVVGKTP----EQASQQGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQE 447          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_VIBCH (Dihydrolipoyl dehydrogenase OS=Vibrio cholerae GN=lpd PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = -1
Query:  352 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSE 675
            IP+  +T PE++ VG TE +A+     EG    VA   + A+ +A+A +  +G+ KLI+  +   ++G  I G +  +L+ E   AI +G   +DI   +HAHPTL E
Sbjct:  347 IPSIAYTEPEVAWVGKTEKEAKA----EGINYEVATFPWAASGRAIASDCADGMTKLIFDKETHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE 450          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_CHLTR (Dihydrolipoyl dehydrogenase OS=Chlamydia trachomatis GN=lpdA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = -1
Query:  340 SIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDE 678
            ++P+  FT PE++ VGL+ P A   A+++   V V K  F+A  KA+A  E +G A +I      +ILG ++ G HA+ LI E + A+     +  I   +HAHPTL+EV  E
Sbjct:  340 AVPSVIFTFPEVASVGLS-PTA---AQQQKIPVKVTKFPFRAIGKAVAMGEADGFAAIISHETTQQILGAYVIGPHASSLISEITLAVRNELTLPCIYETIHAHPTLAEVWAE 448          
The following BLAST results are available for this feature:
BLAST of CN181757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
DLDH_CHLTE1.712e-1338.39Dihydrolipoyl dehydrogenase OS=Chlorobium tepidum ... [more]
DLDH_MYCLE2.236e-1338.60Dihydrolipoyl dehydrogenase OS=Mycobacterium lepra... [more]
DLDH_BUCAP2.236e-1337.96Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH3_PSEPU2.236e-1338.18Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas putid... [more]
DLDH_VIBPA8.498e-1335.19Dihydrolipoyl dehydrogenase OS=Vibrio parahaemolyt... [more]
DLDH_RALEH8.498e-1338.39Dihydrolipoyl dehydrogenase OS=Ralstonia eutropha ... [more]
DLDH3_BACSU8.498e-1339.82Dihydrolipoyl dehydrogenase OS=Bacillus subtilis G... [more]
DLDH1_PSEPU8.498e-1333.63Dihydrolipoyl dehydrogenase OS=Pseudomonas putida ... [more]
DLDH_VIBCH1.110e-1235.19Dihydrolipoyl dehydrogenase OS=Vibrio cholerae GN=... [more]
DLDH_CHLTR1.450e-1238.05Dihydrolipoyl dehydrogenase OS=Chlamydia trachomat... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0001G24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181757 ID=CN181757; Name=CN181757; organism=Citrus sinensis; type=EST; length=678bp
TCTTATTTCAGCAATATTGTCCAGGATTGAAAGCAGAAAATAAATTTCCA
ATTAGAAACTATTATGAATATTAGTACTTCTGCAAAGCATACACAAGGCA
GAGAAACCAGGATACAAATGTCATATAAACATCTGCAAGTTTCTTCACCA
GGTTTGGTTTGCTAGGACGGTCACGGTGTTGATTAGTTCTCTCTGAGGAT
GCAAAATTCCTTGGTACTCCCTAGCACAAGCAAATTTCTTCAAAATTTAA
TATTTCCCAAGCGTCGAGATGCTTTAGACTGCAACTGGTTCACTTACTGG
ATTAGAAGCATGATCTTTAACCTTTGCTGCTTTAAACAGTTCGTCTAGAA
CTTCAGAGAGAGTTGGATGTGCATGAACCGCAAATTTTATGTCCTGAATA
CGTGTGCCTAATGCAATAGCATTAGATGCTTCATGGATAAGGTCTGCAGC
ATGCAGCCCAAAGATATGAACTCCAAGAATCTCACCGTTGTCTGGTCTGT
ATATTAACTTAGCAAGTCCCTCCCCTTCGTTTTCTGCTAAGGCCTTGGTG
TTAGCTTTGAAGCTTGTTTTCGCTACACTTACTTCAAATCCCTCCTTTTC
AGCCTTTTCCCTTGCCTGAGGCTCGGTCAATCCAACCATACTAATTTCAG
GATGTGTGAAACAAGCTGCTGGTATGCT
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