CN181757

Overview
NameCN181757
Unique NameCN181757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5436 contig Csv1_Contig5436:252..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_BUCBP (Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=lpdA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = -1
Query:  343 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLD 675
            IP   +T PEI+ VG+TE +AR    K      V+   +    +A++    EG+ KLI+     +I+G  I G +A +L+ E S AI +G   +D+   +HAHPTL E ++
Sbjct:  349 IPCVSYTEPEIAWVGITENEAR----KNNINYEVSSVLWNTLGRAVSSQCSEGVTKLIFDKKTNKIIGGCIVGSNAGELLGEISLAIEMGCDAEDLALTIHAHPTLYESIN 455          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_MANSE (Dihydrolipoyl dehydrogenase OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 44/118 (37.29%), Postives = 59/118 (50.00%), Query Frame = -1
Query:  325 SIPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAA 678
            +IP+  +T PE+  V  TE    E  +KEG    V K  F AN++A    E +G  K++       ILG HI G    +LI+EA  A   G   +D+    HAHPT +E L E   AA
Sbjct:  376 AIPSVIYTSPEVGWVRKTE----EDLKKEGKAYKVRKFPFLANSRAKTNGEPDGFVKVLSDKATDVILGTHIIGPGGGELINEAVLAQEYGAAAEDVARVCHAHPTCAEALREANLAA 489          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_TRYBB (Dihydrolipoyl dehydrogenase OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 44/120 (36.67%), Postives = 60/120 (50.00%), Query Frame = -1
Query:  316 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAAKVK 675
            IP   +T PE++ VG TE    E+ +K G    V K  F AN++A A    +G  K++       ILGVHI    A +LI  A  A+  G   +D+    HAHPT+SE + E   A   K
Sbjct:  360 IPGVIYTMPEVASVGKTE----EELKKAGVAYKVGKFPFNANSRAKAVATEDGFVKVLTDKATDRILGVHIVCSAAGELIAGALLAMEYGASSEDVGRTCHAHPTMSEAVKEACMACFAK 475          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH3_PSEAE (Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas aeruginosa GN=lpd3 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 37/110 (33.64%), Postives = 58/110 (52.73%), Query Frame = -1
Query:  346 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVL 675
            IP+  +T PE++ VGL E Q +        E  V +  F AN++A   +E EG  K++    + ++LGVH+ G   +++I EA  A+      +D+    H HPT SE L
Sbjct:  348 IPSVIYTQPEVASVGLGEEQLQAARR----EYKVGRFPFSANSRAKINHESEGFIKILSDARSDQVLGVHMIGPGVSEMIGEACVAMEFSASAEDLALTCHPHPTRSEAL 453          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: DLDH_MYCPN (Dihydrolipoyl dehydrogenase OS=Mycoplasma pneumoniae GN=pdhD PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 37/116 (31.90%), Postives = 64/116 (55.17%), Query Frame = -1
Query:  325 PAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVLDELFKAA 672
            P+  +T+PE++ VG TE + +    K+G              KA+A+NE  G  K+++ P  G+ILG  I    A+D+I E + A+  G  + DI  ++  HPT++E++ ++ K A
Sbjct:  340 PSCIYTNPEVASVGYTEMELK----KQGIPYVKTNLVLAHCGKAIADNETNGFVKMMFDPQTGKILGCCIIAATASDMIAELALAMGAGLTVFDIANSISPHPTINEMIADVCKKA 451          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: MERA_STAES (Mercuric reductase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=merA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = -1
Query:  346 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVL 675
            +P   FT+P I+ VGLTE QA+EK    G++V  +     A  +AL  +E  G+ KL+      +++G HI   +A D+I+ A+ A+  G  I+D+  +   + T++E L
Sbjct:  423 VPGVTFTNPSIATVGLTEQQAKEK----GYDVKTSVLPLDAVPRALVNHETTGVYKLVVNAQTQKLIGAHIVSENAGDVIYAATLAVQFGLTIEDLTDSFAPYLTMAEGL 528          
BLAST of CN181757 vs. ExPASy Swiss-Prot
Match: MERA_STAAU (Mercuric reductase OS=Staphylococcus aureus GN=merA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = -1
Query:  346 IPAACFTHPEISMVGLTEPQAREKAEKEGFEVSVAKTSFKANTKALAENEGEGLAKLIYRPDNGEILGVHIFGLHAADLIHEASNAIALGTRIQDIKFAVHAHPTLSEVL 675
            +P   FT+P I+ VGLTE QA+EK    G++V  +     A  +AL  +E  G+ KL+      +++G HI   +A D+I+ A+ A+  G  I+D+  +   + T++E L
Sbjct:  423 VPGVTFTNPSIATVGLTEQQAKEK----GYDVKTSVLPLDAVPRALVNHETTGVYKLVVNAQTQKLIGAHIVSENAGDVIYAATLAVQFGLTIEDLTDSFAPYLTMAEGL 528          
The following BLAST results are available for this feature:
BLAST of CN181757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
DLDH_BUCBP4.217e-1235.14Dihydrolipoyl dehydrogenase OS=Buchnera aphidicola... [more]
DLDH_MANSE5.508e-1237.29Dihydrolipoyl dehydrogenase OS=Manduca sexta PE=2 ... [more]
DLDH_TRYBB9.395e-1236.67Dihydrolipoyl dehydrogenase OS=Trypanosoma brucei ... [more]
DLDH3_PSEAE9.395e-1233.64Dihydrolipoyl dehydrogenase 3 OS=Pseudomonas aerug... [more]
DLDH_MYCPN1.603e-1131.90Dihydrolipoyl dehydrogenase OS=Mycoplasma pneumoni... [more]
MERA_STAES3.570e-1133.64Mercuric reductase OS=Staphylococcus epidermidis (... [more]
MERA_STAAU3.570e-1133.64Mercuric reductase OS=Staphylococcus aureus GN=mer... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0001G24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0001G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN181757 ID=CN181757; Name=CN181757; organism=Citrus sinensis; type=EST; length=678bp
TCTTATTTCAGCAATATTGTCCAGGATTGAAAGCAGAAAATAAATTTCCA
ATTAGAAACTATTATGAATATTAGTACTTCTGCAAAGCATACACAAGGCA
GAGAAACCAGGATACAAATGTCATATAAACATCTGCAAGTTTCTTCACCA
GGTTTGGTTTGCTAGGACGGTCACGGTGTTGATTAGTTCTCTCTGAGGAT
GCAAAATTCCTTGGTACTCCCTAGCACAAGCAAATTTCTTCAAAATTTAA
TATTTCCCAAGCGTCGAGATGCTTTAGACTGCAACTGGTTCACTTACTGG
ATTAGAAGCATGATCTTTAACCTTTGCTGCTTTAAACAGTTCGTCTAGAA
CTTCAGAGAGAGTTGGATGTGCATGAACCGCAAATTTTATGTCCTGAATA
CGTGTGCCTAATGCAATAGCATTAGATGCTTCATGGATAAGGTCTGCAGC
ATGCAGCCCAAAGATATGAACTCCAAGAATCTCACCGTTGTCTGGTCTGT
ATATTAACTTAGCAAGTCCCTCCCCTTCGTTTTCTGCTAAGGCCTTGGTG
TTAGCTTTGAAGCTTGTTTTCGCTACACTTACTTCAAATCCCTCCTTTTC
AGCCTTTTCCCTTGCCTGAGGCTCGGTCAATCCAACCATACTAATTTCAG
GATGTGTGAAACAAGCTGCTGGTATGCT
back to top