CN188705

Overview
NameCN188705
Unique NameCN188705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLD6_ARATH (Putative cellulose synthase-like protein D6 OS=Arabidopsis thaliana GN=CSLD6 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 3
Query:  333 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            + P +DV + TAD  KEPPL   NT LS+++ DYP EKLSVY+SDDGGS +T  A  EAA FA  W+PFCRK  +  RNP +YF
Sbjct:  202 DLPGIDVFVSTADAEKEPPLVTANTILSILSVDYPVEKLSVYISDDGGSLVTFEAIAEAASFAKIWVPFCRKHKIEPRNPESYF 285          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLD3_ORYSJ (Cellulose synthase-like protein D3 OS=Oryza sativa subsp. japonica GN=CSLD3 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 70/199 (35.18%), Postives = 97/199 (48.74%), Query Frame = 3
Query:   36 GKSSGTEIPPLNTTEPIRR-----TALNRVFAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXXIL--ALMWATTQAFRMRPIHRREFPGNL-QKVVRPR--------EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            G   G  +P     +P+ R     T++   + +     +F LL++    LT R RNP               L  A  W      ++ P++R      L +K   P         + P LDV + TADP KEP L+   T LS++A DYP EKL+ YVSDDGG+ LT  A  EAA FA  W+PFC+K ++  RNP +YF
Sbjct:  266 GGGGGGPLPEQKPFKPLTRKIPMPTSVISPYRIFIVIRMFVLLFY----LTWRIRNPNMEALWLWGMSIVCELWFAFSWLLDMLPKVNPVNRSTDLAVLKEKFETPSPSNPHGRSDLPGLDVFVSTADPEKEPVLTTATTILSILAVDYPVEKLACYVSDDGGALLTFEAMAEAASFANVWVPFCKKHDIEPRNPDSYF 460          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLD4_ARATH (Cellulose synthase-like protein D4 OS=Arabidopsis thaliana GN=CSLD4 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.702e-22
Identity = 47/84 (55.95%), Postives = 60/84 (71.43%), Query Frame = 3
Query:  333 EFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            + P +D+ + TADP KEPPL   NT LS++A DYP EK+S Y+SDDGG+ L+  A  EAA FA  W+PFCRK N+  RNP +YF
Sbjct:  352 DLPGIDLFVSTADPEKEPPLVTANTILSILAVDYPVEKVSCYLSDDGGALLSFEAMAEAASFADLWVPFCRKHNIEPRNPDSYF 435          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CSLF7_ORYSJ (Probable mixed-linked glucan synthase 7 OS=Oryza sativa subsp. japonica GN=CSLF7 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNLQKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            A MW   Q  +  P+ R     ++  +      PA+DV + TADP KEPPL+  NT LS++A  YP  K++ YVSDD G+ +T  A +EAA+FAA W+PFCRK  +  RNP AYF
Sbjct:  113 AFMWVLDQLPKTMPVRRAV---DVTALNDDTLLPAMDVFVTTADPDKEPPLATANTVLSILAAGYPAGKVTCYVSDDAGAEVTRGAVVEAARFAALWVPFCRKHGVEPRNPEAYF 224          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA9_ARATH (Probable cellulose synthase A catalytic subunit 9 [UDP-forming] OS=Arabidopsis thaliana GN=CESA9 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 64/181 (35.36%), Postives = 91/181 (50.28%), Query Frame = 3
Query:   63 PLNTTEPIRRTALNRVFAVVYT-CAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXXIL--ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            PL+   PIR + +N    +++   AI  L +H+      R  +P               +  A+ W   Q  +  PI R  +   L    +K  +P E   +DV + T DP KEPPL   NT LS++A DYP EK++ YVSDDG + LT  A    A+FA  W+PFC+KF++  R P  YF
Sbjct:  266 PLSRKLPIRSSRINPYRMLIFCRLAILGLFFHY------RILHPVNDAFGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVEKVACYVSDDGAAMLTFEALSYTAEFARKWVPFCKKFSIEPRAPEWYF 440          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSJ (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 59/179 (32.96%), Postives = 87/179 (48.60%), Query Frame = 3
Query:   63 PLNTTEPIRRTALNRV-FAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXXILALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            PL+   PI  + +N     +V    +  +  H+  T  +R   P                AL W   Q  +  PI+R  +   L     +   P +   +D+ + T DP KEPPL   NT LS++A DYP +K+S YVSDDG + LT  A  E ++FA  W+PFC+K+++  R P  YF
Sbjct:  253 PLSRKVPISSSRINPYRMVIVLRLIVLCIFLHYRITNPVRNAYPLWLLSVICEIW----FALSWILDQFPKWSPINRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYF 427          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA2_ORYSI (Probable cellulose synthase A catalytic subunit 2 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA2 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 59/179 (32.96%), Postives = 87/179 (48.60%), Query Frame = 3
Query:   63 PLNTTEPIRRTALNRV-FAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXXILALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            PL+   PI  + +N     +V    +  +  H+  T  +R   P                AL W   Q  +  PI+R  +   L     +   P +   +D+ + T DP KEPPL   NT LS++A DYP +K+S YVSDDG + LT  A  E ++FA  W+PFC+K+++  R P  YF
Sbjct:  253 PLSRKVPISSSRINPYRMVIVLRLIVLCIFLHYRITNPVRNAYPLWLLSVICEIW----FALSWILDQFPKWSPINRETYLDRLALRYDREGEPSQLAPVDIFVSTVDPMKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFDALAETSEFARKWVPFCKKYSIEPRAPEWYF 427          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA5_ARATH (Cellulose synthase A catalytic subunit 5 [UDP-forming] OS=Arabidopsis thaliana GN=CESA5 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 66/205 (32.20%), Postives = 95/205 (46.34%), Query Frame = 3
Query:   12 KHIKKEMRGKSSGTEIP-------PLNTTEPIRRTALNRV-FAVVYTCAIFALLYHHVETLTIRGRNPXXXXXXXXXXXXXXIL--ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            KH      G     +IP       PL+   PI+ + +N     +V    I  L +H+      R  +P               +  A+ W   Q  +  PI R  +   L    +K  +P E   +DV + T DP KEPPL   NT LS++A DYP ++++ YVSDDG + LT  A  E A+FA  W+PFC+K+ +  R P  YF
Sbjct:  224 KHDGDSSLGDGDDADIPMMDEGRQPLSRKVPIKSSKINPYRMLIVLRLVILGLFFHY------RILHPVNDAYALWLISVICEIWFAVSWVLDQFPKWYPIERETYLDRLSLRYEKEGKPSELAGVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDRVACYVSDDGAAMLTFEALSETAEFARKWVPFCKKYTIEPRAPEWYF 422          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSJ (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. japonica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            AL W   Q  +  PI+R  +   L     +   P +   +DV + T DP KEPPL   NT LS++A DYP +K+S YVSDDG + LT  A  E A+FA  W+PFC+K N+  R P  YF
Sbjct:  312 ALSWLLDQFPKWYPINRETYLDRLALRYDREGEPSQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYF 430          
BLAST of CN188705 vs. ExPASy Swiss-Prot
Match: CESA1_ORYSI (Probable cellulose synthase A catalytic subunit 1 [UDP-forming] OS=Oryza sativa subsp. indica GN=CESA1 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.792e-22
Identity = 52/119 (43.70%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  240 ALMWATTQAFRMRPIHRREFPGNL----QKVVRPREFPALDVLICTADPYKEPPLSVVNTALSVMAYDYPTEKLSVYVSDDGGSALTLFAFMEAAKFAAHWLPFCRKFNLMERNPHAYF 584
            AL W   Q  +  PI+R  +   L     +   P +   +DV + T DP KEPPL   NT LS++A DYP +K+S YVSDDG + LT  A  E A+FA  W+PFC+K N+  R P  YF
Sbjct:  312 ALSWLLDQFPKWYPINRETYLDRLALRYDREGEPSQLAPIDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYF 430          
The following BLAST results are available for this feature:
BLAST of CN188705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
CSLD6_ARATH9.978e-2357.14Putative cellulose synthase-like protein D6 OS=Ara... [more]
CSLD3_ORYSJ9.978e-2335.18Cellulose synthase-like protein D3 OS=Oryza sativa... [more]
CSLD4_ARATH1.702e-2255.95Cellulose synthase-like protein D4 OS=Arabidopsis ... [more]
CSLF7_ORYSJ2.223e-2246.09Probable mixed-linked glucan synthase 7 OS=Oryza s... [more]
CESA9_ARATH2.223e-2235.36Probable cellulose synthase A catalytic subunit 9 ... [more]
CESA2_ORYSJ2.223e-2232.96Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA2_ORYSI2.223e-2232.96Probable cellulose synthase A catalytic subunit 2 ... [more]
CESA5_ARATH3.792e-2232.20Cellulose synthase A catalytic subunit 5 [UDP-form... [more]
CESA1_ORYSJ3.792e-2243.70Probable cellulose synthase A catalytic subunit 1 ... [more]
CESA1_ORYSI3.792e-2243.70Probable cellulose synthase A catalytic subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006J20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188705 ID=CN188705; Name=CN188705; organism=Citrus sinensis; type=EST; length=719bp
GCGTTTGATATAAGCACATCAAAAAAGAAATGAGAGGCAAAAGTAGCGGC
ACCGAGATCCCTCCTCTTAACACGACGGAGCCCATCCGCCGGACCGCCTT
GAACCGTGTGTTCGCGGTAGTTTACACGTGTGCCATATTTGCTCTACTGT
ATCACCATGTAGAAACACTAACTATCCGCGGCAGAAACCCCTTGGTGCTA
GTAGTATCTTTCTGTTTGTTACTGTCCGATGTTATTCTAGCCTTGATGTG
GGCAACCACGCAGGCCTTTCGCATGCGCCCTATTCATCGCAGGGAATTCC
CCGGAAACCTCCAAAAAGTTGTGAGACCGAGAGAATTTCCTGCTTTGGAT
GTGCTTATATGCACAGCGGATCCCTACAAGGAACCGCCCCTCAGTGTTGT
GAACACGGCTTTATCGGTGATGGCTTACGACTATCCAACGGAGAAGCTTT
CGGTTTATGTATCGGACGATGGTGGATCGGCACTTACTCTCTTCGCTTTC
ATGGAGGCAGCTAAGTTTGCAGCCCACTGGTTACCTTTTTGCAGGAAGTT
CAATCTTATGGAGAGAAACCCTCATGCATATTTCTCCTCATCATCATCCA
CATCAACCCACGCTTGTTGCTCCGAGATTAAGGTATACATATAAATAGAA
TATAATGGTAGCATCTCATTTTTACAAAGTGATGATGATATTTCAATATA
TTAATAAATTTAAAAAAAA
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